Evidence map›Paper›PMID 28667701›Full record

ArticleJournal of cellular and molecular medicine2017

The functional variant rs34330 of CDKN1B is associated with risk of neuroblastoma.

Mario Capasso, Lee D McDaniel, Flora Cimmino, Andrea Cirino, Daniela Formicola, Mike R Russell, Pichai Raman, Kristina A Cole, Sharon J Diskin

Open access · goldAbstract read
In one paragraph

Article in Journal of cellular and molecular medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
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  4. Review
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  6. Review
  7. Article
  8. Association of Genetic Variants at theInternational journal of molecular sciences · 2024
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  11. Article
  12. Aging · 2021
    Article
  13. Article
  14. Molecular Genetics in Neuroblastoma Prognosis.Children (Basel, Switzerland) · 2021
    Review
  15. Journal of Cancer · 2021
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Mario CapassoDipartimento di Medicina Molecolare e Biotecnologie Mediche, Università degli Studi di Napoli Federico II, Naples, Italy.ORCID http://orcid.org/0000-0003-3306-1259
Lee D McDanielDivision of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Flora CimminoDipartimento di Medicina Molecolare e Biotecnologie Mediche, Università degli Studi di Napoli Federico II, Naples, Italy.
Andrea CirinoDipartimento di Medicina Molecolare e Biotecnologie Mediche, Università degli Studi di Napoli Federico II, Naples, Italy.
Daniela FormicolaDipartimento di Medicina Molecolare e Biotecnologie Mediche, Università degli Studi di Napoli Federico II, Naples, Italy.
Mike R RussellDivision of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Pichai RamanDivision of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Kristina A ColeDivision of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Sharon J DiskinDivision of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Children's Hospital of Philadelphia · USCeinge Biotecnologie Avanzate (Italy) · ITSDN Istituto di Ricerca Diagnostica e Nucleare · IT

Funding

Structural Variation in NeuroblastomaR01CA204974 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI DISKIN, SHARON · 2016 to 2020
$1.9M
NCI NIH HHS R01 CA204974
6 · The paper itself

Abstract

The genetic aetiology of sporadic neuroblastoma is still largely unknown. We have identified diverse neuroblastoma susceptibility loci by genomewide association studies (GWASs); however, additional SNPs that likely contribute to neuroblastoma susceptibility prompted this investigation for identification of additional variants that are likely hidden among signals discarded by the multiple testing corrections used in the analysis of genomewide data. There is evidence suggesting the CDKN1B, coding for the cycle inhibitor p27Kip1, is involved in neuroblastoma. We thus assess whether genetic variants of CDKN1B are associated with neuroblastoma. We imputed all possible genotypes across CDKN1B locus on a discovery case series of 2101 neuroblastoma patients and 4202 genetically matched controls of European ancestry. The most significantly associated rs34330 was analysed in an independent Italian cohort of 311 cases and 709 controls. In vitro functional analysis was carried out in HEK293T and in neuroblastoma cell line SHEP-2, both transfected with pGL3-CDKN1B-CC or pGL3-CDKN1B-TT constructs. We identified an association of the rs34330 T allele (-79C/T) with the neuroblastoma risk (P

Indexed as

Gene Expression Regulation, NeoplasticGenetic Predisposition to DiseasePolymorphism, Single NucleotideAllelesBrain NeoplasmsCase-Control StudiesCell Line, TumorCyclin-Dependent Kinase Inhibitor p27Gene FrequencyGenome-Wide Association StudyHEK293 CellsHumansNeuroblastomaPlasmidsPromoter Regions, GeneticRiskCDKN1B protein, humanCyclin-Dependent Kinase Inhibitor p27CDKN1Bgenetic associationGWASNeuroblastomars34330SNP

Identifiers

PMID28667701
PMCPMC5706517
OpenAlexW2724407806

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.