Evidence map›Paper›PMID 28667106›Full record

ArticleApplied and environmental microbiology2017

Discovery of Lysine Hydroxylases in the Clavaminic Acid Synthase-Like Superfamily for Efficient Hydroxylysine Bioproduction.

Ryotaro Hara, Kai Yamagata, Ryoma Miyake, Hiroshi Kawabata, Hisatoshi Uehara, Kuniki Kino

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Uniform Preparation of (4The Journal of organic chemistry · 2025
    Article
  4. Article
  5. Sequential oxidation of L-lysine by a non-heme iron hydroxylase.bioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Enzymatic Synthesis of l-Applied and environmental microbiology · 2021
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Ryotaro HaraResearch Institute for Science and Engineering, Waseda University, Tokyo, Japan ryo_h@aoni.waseda.jp kkino@waseda.jp.
Kai YamagataDepartment of Applied Chemistry, Faculty of Science and Engineering, Waseda University, Tokyo, Japan.
Ryoma MiyakeMitsubishi Chemical Corporation, Yokohama R&D Center, Yokohama, Japan.
Hiroshi KawabataMitsubishi Chemical Corporation, Yokohama R&D Center, Yokohama, Japan.
Hisatoshi UeharaMitsubishi Chemical Corporation, Yokohama R&D Center, Yokohama, Japan.
Kuniki KinoResearch Institute for Science and Engineering, Waseda University, Tokyo, Japan ryo_h@aoni.waseda.jp kkino@waseda.jp.
Waseda University · JPAPI (Japan) · JPMitsubishi Chemical (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hydroxylation via C-H bond activation in the absence of any harmful oxidizing reagents is technically difficult in modern chemistry. In this work, we attempted to generate pharmaceutically important hydroxylysine from readily available l-lysine with l-lysine hydroxylases from diverse microorganisms. Clavaminic acid synthase-like superfamily gene mining and phylogenetic analysis led to the discovery of six biocatalysts, namely two l-lysine 3

Indexed as

BacteriaEscherichia coliHydroxylysineLysineMixed Function OxygenasesMultigene FamilyPhylogenySubstrate Specificityclavaminate synthaseHydroxylysineLysineMixed Function Oxygenasesbioconversionclavaminic acid synthase-like superfamilydioxygenaseshydroxylaseshydroxylationhydroxylysinel-lysine

Identifiers

PMID28667106
PMCPMC5561292
OpenAlexW2732671830

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.