Evidence map›Paper›PMID 28665408›Full record

ArticleNature communications2017

GroEL actively stimulates folding of the endogenous substrate protein PepQ.

Jeremy Weaver, Mengqiu Jiang, Andrew Roth, Jason Puchalla, Junjie Zhang, Hays S Rye

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  5. Review
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  12. Structural basis of substrate progression through the bacterial chaperonin cycle.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Article
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  15. A proteome-wide map of chaperone-assisted protein refolding in a cytosol-like milieu.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Article
  17. Article
  18. Allosteric differences dictate GroEL complementation of E. coli.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
    Article
  19. Temperature Regulates Stability, Ligand Binding (MgJournal of the American Chemical Society · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jeremy WeaverDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77845, USA.
Mengqiu JiangDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77845, USA.
Andrew RothDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77845, USA.
Jason PuchallaDepartment of Physics, Princeton University, Princeton, New Jersey 08544, USA.
Junjie ZhangDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77845, USA.
Hays S RyeDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77845, USA.

Funding

Mechanisms of Chaperonin-Mediated Protein FoldingR01GM065421 · NIGMS · TEXAS A&M UNIVERSITY · PI RYE, HAYS S · 2003 to 2013
$2.5M
NIGMS NIH HHS R01 GM065421
6 · The paper itself

Abstract

Many essential proteins cannot fold without help from chaperonins, like the GroELS system of Escherichia coli. How chaperonins accelerate protein folding remains controversial. Here we test key predictions of both passive and active models of GroELS-stimulated folding, using the endogenous E. coli metalloprotease PepQ. While GroELS increases the folding rate of PepQ by over 15-fold, we demonstrate that slow spontaneous folding of PepQ is not caused by aggregation. Fluorescence measurements suggest that, when folding inside the GroEL-GroES cavity, PepQ populates conformations not observed during spontaneous folding in free solution. Using cryo-electron microscopy, we show that the GroEL C-termini make physical contact with the PepQ folding intermediate and help retain it deep within the GroEL cavity, resulting in reduced compactness of the PepQ monomer. Our findings strongly support an active model of chaperonin-mediated protein folding, where partial unfolding of misfolded intermediates plays a key role.

Indexed as

DipeptidasesEscherichia coliEscherichia coli ProteinsHeat-Shock ProteinsProtein ConformationProtein FoldingDipeptidasesEscherichia coli ProteinsGroE protein, E coligroS protein, E coliHeat-Shock Proteinsproline dipeptidase

Identifiers

PMID28665408
PMCPMC5497066

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.