Evidence map›Paper›PMID 28663334›Full record

ArticleCancer research2017

Mitochondrial Genomic Backgrounds Affect Nuclear DNA Methylation and Gene Expression.

Carolyn J Vivian, Amanda E Brinker, Stefan Graw, Devin C Koestler, Christophe Legendre, Gerald C Gooden, Bodour Salhia, Danny R Welch

Open access · greenAbstract read
In one paragraph

Article in Cancer research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 1 synthesis or guideline pooled it, 79 citations in OpenAlex.

  1. Pooled it
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  14. Mitophagy-promoting miR-138-5p promoter demethylation inhibits pyroptosis in sepsis-associated acute lung injury.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2023
    Article
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  16. Review
  17. Article
  18. Mitochondrial micropeptide STMP1 promotes G1/S transition by enhancing mitochondrial complex IV activity.Molecular therapy : the journal of the American Society of Gene Therapy · 2022
    Article
  19. Mechanisms of breast cancer metastasis.Clinical & experimental metastasis · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Carolyn J VivianDepartment of Cancer Biology, University of Kansas Medical Center, Kansas City, Kansas.
Amanda E BrinkerDepartment of Cancer Biology, University of Kansas Medical Center, Kansas City, Kansas.
Stefan GrawDepartment of Biostatistics, University of Kansas Medical Center, Kansas City, Kansas.
Devin C KoestlerDepartment of Biostatistics, University of Kansas Medical Center, Kansas City, Kansas.
Christophe LegendreTranslational Genomics Research Institute, Phoenix, Arizona.
Gerald C GoodenTranslational Genomics Research Institute, Phoenix, Arizona.
Bodour SalhiaTranslational Genomics Research Institute, Phoenix, Arizona.
Danny R WelchDepartment of Cancer Biology, University of Kansas Medical Center, Kansas City, Kansas. dwelch@kumc.edu.
The University of Kansas Cancer Center · USTranslational Genomics Research Institute · USUniversity of Kansas Medical Center · US

Funding

Transgenic & Gene-Targeting Shared ResourceP30CA168524 · NCI · UNIVERSITY OF KANSAS MEDICAL CENTER · PI ROY A. JENSEN · 2012 to 2026
$40.1M
Using PCORnet to Expand the DS-CONNECT Cohort Through Healthcare System Recruitment, Incorporating Electronic Health Records, and Assessing Self-DeterminationU54HD090216 · NICHD · UNIVERSITY OF KANSAS LAWRENCE · PI COLOMBO, JOHN A. · 2016 to 2020
$6.2M
MOLECULAR REGULATION OF BREAST CANCER METASTASISR01CA087728 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI WELCH, DANNY R. · 2000 to 2008
$2.7M
Heartland Institute for Clinical and Translational ResearchKL2TR000119 · NCATS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI BAROHN, RICHARD J. · 2012 to 2015
$2.5M
KISS1: Defining Mechanisms for Antimetastatic TherapyR01CA134981 · NCI · UNIVERSITY OF KANSAS MEDICAL CENTER · PI WELCH, DANNY R. · 2009 to 2014
$1.5M
NCATS NIH HHS KL2 TR000119NCI NIH HHS P30 CA168524NCI NIH HHS R01 CA087728NCI NIH HHS R01 CA134981NICHD NIH HHS U54 HD090216
6 · The paper itself

Abstract

Mitochondrial DNA (mtDNA) mutations and polymorphisms contribute to many complex diseases, including cancer. Using a unique mouse model that contains nDNA from one mouse strain and homoplasmic mitochondrial haplotypes from different mouse strain(s)-designated Mitochondrial Nuclear Exchange (MNX)-we showed that mtDNA could alter mammary tumor metastasis. Because retrograde and anterograde communication exists between the nuclear and mitochondrial genomes, we hypothesized that there are differential mtDNA-driven changes in nuclear (n)DNA expression and DNA methylation. Genome-wide nDNA methylation and gene expression were measured in harvested brain tissue from paired wild-type and MNX mice. Selective differential DNA methylation and gene expression were observed between strains having identical nDNA, but different mtDNA. These observations provide insights into how mtDNA could be altering epigenetic regulation and thereby contribute to the pathogenesis of metastasis.

Indexed as

DNA MethylationGene ExpressionAnimalsBrainCell NucleusDNA, MitochondrialEpigenesis, GeneticGenome, MitochondrialGenomicsHaplotypesHumansMice, Inbred BALB CMice, Inbred C3HMice, Inbred C57BLMutationDNA, Mitochondrial

Identifiers

PMID28663334
PMCPMC5690839
OpenAlexW2729586143

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.