Evidence map›Paper›PMID 28661205›Full record

ArticleExperimental biology and medicine (Maywood, N.J.)2017

Preliminary profiling of blood transcriptome in a rat model of hemorrhagic shock.

D Braga, M Barcella, F D'Avila, S Lupoli, F Tagliaferri, M H Santamaria, F A DeLano, G Baselli, G W Schmid-Schönbein, E B Kistler and 2 more

Open access · greenAbstract read
In one paragraph

Article in Experimental biology and medicine (Maywood, N.J.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.1field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

D Braga1 Dipartimento di Scienze della Salute, Università Degli Studi di Milano, Milan 20142, Italy.
M Barcella1 Dipartimento di Scienze della Salute, Università Degli Studi di Milano, Milan 20142, Italy.
F D'Avila1 Dipartimento di Scienze della Salute, Università Degli Studi di Milano, Milan 20142, Italy.
S Lupoli1 Dipartimento di Scienze della Salute, Università Degli Studi di Milano, Milan 20142, Italy.
F Tagliaferri2 Fondazione Filarete, Milan 20139, Italy.
M H Santamaria3 Department of Bioengineering, University of California San Diego, La Jolla, CA 92093, USA.
F A DeLano3 Department of Bioengineering, University of California San Diego, La Jolla, CA 92093, USA.
G Baselli4 Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milan 20133, Italy.
G W Schmid-Schönbein3 Department of Bioengineering, University of California San Diego, La Jolla, CA 92093, USA.
E B Kistler5 Department of Anesthesiology & Critical Care, VA San Diego Healthcare System, San Diego, CA 92103, USA.
F Aletti3 Department of Bioengineering, University of California San Diego, La Jolla, CA 92093, USA.
C Barlassina1 Dipartimento di Scienze della Salute, Università Degli Studi di Milano, Milan 20142, Italy.
University of Milan · ITLa Jolla Bioengineering Institute · USFondazione Filarete · ITPolitecnico di Milano · ITUniversity of California, San Diego · USVA San Diego Healthcare System · US

Funding

Digestive Enzymes and Microvascular Inflammation in ShockR01GM085072 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SCHMID-SCHOENBEIN, GEERT W. · 2009 to 2017
$2.2M
The Role of Intestinal Digestive Enzymes in Circulatory ShockIK2BX001277 · VA · VA SAN DIEGO HEALTHCARE SYSTEM · PI KISTLER, ERIK · 2012 to 2016
–
BLRD VA IK2 BX001277NIGMS NIH HHS R01 GM085072
6 · The paper itself

Abstract

Hemorrhagic shock is a leading cause of morbidity and mortality worldwide. Significant blood loss may lead to decreased blood pressure and inadequate tissue perfusion with resultant organ failure and death, even after replacement of lost blood volume. One reason for this high acuity is that the fundamental mechanisms of shock are poorly understood. Proteomic and metabolomic approaches have been used to investigate the molecular events occurring in hemorrhagic shock but, to our knowledge, a systematic analysis of the transcriptomic profile is missing. Therefore, a pilot analysis using paired-end RNA sequencing was used to identify changes that occur in the blood transcriptome of rats subjected to hemorrhagic shock after blood reinfusion. Hemorrhagic shock was induced using a Wigger's shock model. The transcriptome of whole blood from shocked animals shows modulation of genes related to inflammation and immune response (Tlr13, Il1b, Ccl6, Lgals3), antioxidant functions (Mt2A, Mt1), tissue injury and repair pathways (Gpnmb, Trim72) and lipid mediators (Alox5ap, Ltb4r, Ptger2) compared with control animals. These findings are congruent with results obtained in hemorrhagic shock analysis by other authors using metabolomics and proteomics. The analysis of blood transcriptome may be a valuable tool to understand the biological changes occurring in hemorrhagic shock and a promising approach for the identification of novel biomarkers and therapeutic targets. Impact statement This study provides the first pilot analysis of the changes occurring in transcriptome expression of whole blood in hemorrhagic shock (HS) rats. We showed that the analysis of blood transcriptome is a useful approach to investigate pathways and functional alterations in this disease condition. This pilot study encourages the possible application of transcriptome analysis in the clinical setting, for the molecular profiling of whole blood in HS patients.

Indexed as

Gene Expression ProfilingAnimalsBlood CellsDisease Models, AnimalMaleRats, WistarSequence Analysis, RNAShock, Hemorrhagichemorrhagic shockRatsreperfusionRNAseqtranscriptomewhole blood

Identifiers

PMID28661205
PMCPMC5544169
OpenAlexW2730019421

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.