Evidence map›Paper›PMID 28659482›Full record

ArticleJournal of virology2017

Complete Genome Sequencing of Influenza A Viruses within Swine Farrow-to-Wean Farms Reveals the Emergence, Persistence, and Subsidence of Diverse Viral Genotypes.

Andres Diaz, Douglas Marthaler, Marie Culhane, Srinand Sreevatsan, Moh Alkhamis, Montserrat Torremorell

Open access · hybridAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Journal of virology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 55 citations in OpenAlex.

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  16. Review of genome sequencing technologies in molecular characterization of influenza A viruses in swine.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Andres DiazVeterinary Population Medicine Department, College of Veterinary Medicine, University of Minnesota, Saint Paul, Minnesota, USA.
Douglas MarthalerVeterinary Diagnostic Laboratory, College of Veterinary Medicine, University of Minnesota, Saint Paul, Minnesota, USA.
Marie CulhaneVeterinary Population Medicine Department, College of Veterinary Medicine, University of Minnesota, Saint Paul, Minnesota, USA.
Srinand SreevatsanVeterinary Population Medicine Department, College of Veterinary Medicine, University of Minnesota, Saint Paul, Minnesota, USA.
Moh AlkhamisEnvironment and Life Sciences Research Center, Kuwait Institute for Scientific Research, Kuwait City, Kuwait.
Montserrat TorremorellVeterinary Population Medicine Department, College of Veterinary Medicine, University of Minnesota, Saint Paul, Minnesota, USA torr0033@umn.edu.
University of Minnesota · USKuwait Institute for Scientific Research · KW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Influenza A viruses (IAVs) are endemic in swine and represent a public health risk. However, there is limited information on the genetic diversity of swine IAVs within farrow-to-wean farms, which is where most pigs are born. In this longitudinal study, we sampled 5 farrow-to-wean farms for a year and collected 4,190 individual nasal swabs from three distinct pig subpopulations. Of these, 207 (4.9%) samples tested PCR positive for IAV, and 124 IAVs were isolated. We sequenced the complete genomes of 123 IAV isolates and found 31 H1N1, 26 H1N2, 63 H3N2, and 3 mixed IAVs. Based on the IAV hemagglutinin, seven different influenza A viral groups (VGs) were identified. Most of the remaining IAV gene segments allowed us to differentiate the same VGs, although an additional viral group was identified for gene segment 3 (PA). Moreover, the codetection of more than one IAV VG was documented at different levels (farm, subpopulation, and individual pigs), highlighting the environment for potential IAV reassortment. Additionally, 3 out of 5 farms contained IAV isolates (

Indexed as

Genetic VariationSequence Analysis, DNAAnimalsFarmsGenotypeInfluenza A virusLongitudinal StudiesMolecular EpidemiologyOrthomyxoviridae InfectionsSwineSwine Diseasescomplete genome sequencingdiseases of swineinfluenza A virus diversityinfluenza A virus emergenceinfluenza A virus epidemiologyinfluenza A virus persistenceinfluenza in swine herdsnext-generation-sequencing technologiesswine influenzaswine influenza epidemiology

Identifiers

PMID28659482
PMCPMC5571239
OpenAlexW2726252279

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.