Evidence map›Paper›PMID 28658626›Full record

ArticleCell reports2017

Functional Dissection of the Pol V Largest Subunit CTD in RNA-Directed DNA Methylation.

Jered M Wendte, Jeremy R Haag, Jasleen Singh, Anastasia McKinlay, Olga M Pontes, Craig S Pikaard

Abstract read
In one paragraph

Article in Cell reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
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  4. The effect of RNA polymerase V on 24-nt siRNA accumulation depends on DNA methylation contexts and histone modifications in rice.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Article
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  9. Article
  10. Article
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  12. Article
  13. Ser7 of RNAPII-CTD facilitates heterochromatin formation by linking ncRNA to RNAi.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jered M WendteDepartment of Biology, Indiana University, 915 East Third Street, Bloomington, IN 47405, USA.
Jeremy R HaagDepartment of Biology, Indiana University, 915 East Third Street, Bloomington, IN 47405, USA; Division of Biology and Biomedical Sciences, Washington University, St. Louis, MO 63130, USA.
Jasleen SinghDepartment of Biology, Indiana University, 915 East Third Street, Bloomington, IN 47405, USA.
Anastasia McKinlayDepartment of Biology, Indiana University, 915 East Third Street, Bloomington, IN 47405, USA.
Olga M PontesDivision of Biology and Biomedical Sciences, Washington University, St. Louis, MO 63130, USA.
Craig S PikaardDepartment of Biology, Indiana University, 915 East Third Street, Bloomington, IN 47405, USA; Department of Molecular and Cellular Biochemistry, Indiana University, 915 East Third Street, Bloomington, IN 47405, USA; Howard Hughes Medical Institute, Indiana University, 915 East Third Street, Bloomington, IN 47405, USA. Electronic address: cpikaard@indiana.edu.

Funding

TRAINING IN GENETICST32GM007757 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI KUMAR, JUSTIN P · 1985 to 2014
$8.1M
Roles of RNA Polymerases IV and V in siRNA-mediated gene silencingR01GM077590 · NIGMS · WASHINGTON UNIVERSITY · PI PIKAARD, CRAIG STUART · 2006 to 2020
$3.5M
lncRNA Processing and Function in Transcriptional Gene SilencingF31GM116346 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI WENDTE, JERED M · 2015 to 2016
$55k
Howard Hughes Medical InstituteNIGMS NIH HHS F31 GM116346NIGMS NIH HHS R01 GM077590NIGMS NIH HHS T32 GM007757
6 · The paper itself

Abstract

Plant multisubunit RNA polymerase V (Pol V) transcription recruits Argonaute-small interfering RNA (siRNA) complexes that specify sites of RNA-directed DNA methylation (RdDM) for gene silencing. Pol V's largest subunit, NRPE1, evolved from the largest subunit of Pol II but has a distinctive C-terminal domain (CTD). We show that the Pol V CTD is dispensable for catalytic activity in vitro yet essential in vivo. One CTD subdomain (DeCL) is required for Pol V function at virtually all loci. Other CTD subdomains have locus-specific effects. In a yeast two-hybrid screen, the 3'→ 5' exoribonuclease RRP6L1 was identified as an interactor with the DeCL and glutamine-serine (QS)-rich subdomains located downstream of an Argonaute-binding subdomain. Experimental evidence indicates that RRP6L1 trims the 3' ends of Pol V transcripts sliced by Argonaute 4 (AGO4), suggesting a model whereby the CTD enables the spatial and temporal coordination of AGO4 and RRP6L1 RNA processing activities.

Indexed as

DNA-Directed RNA PolymerasesDNA MethylationGene SilencingDNA-Directed RNA Polymeraseschromatin modificationcytosine methylationgene silencingnoncoding RNAPol V transcriptionsiRNA

Identifiers

PMID28658626
PMCPMC5541899

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.