Evidence map›Paper›PMID 28658273›Full record

ArticlePloS one2017

A structural variant in the 5'-flanking region of the TWIST2 gene affects melanocyte development in belted cattle.

Nivedita Awasthi Mishra, Cord Drögemüller, Vidhya Jagannathan, Irene Keller, Daniel Wüthrich, Rémy Bruggmann, Julia Beck, Ekkehard Schütz, Bertram Brenig, Steffi Demmel and 10 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 3 countries.

Nivedita Awasthi MishraInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0000-0001-5529-7858
Cord DrögemüllerInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Vidhya JagannathanInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Irene KellerDepartment of Clinical Research, University of Bern, Bern, Switzerland.
Daniel WüthrichSwiss Institute of Bioinformatics, Bern, Switzerland.
Rémy BruggmannSwiss Institute of Bioinformatics, Bern, Switzerland.
Julia BeckChronix Biomedical, Göttingen, Germany.ORCID http://orcid.org/0000-0002-4143-1363
Ekkehard SchützChronix Biomedical, Göttingen, Germany.
Bertram BrenigInstitute of Veterinary Medicine, University of Goettingen, Göttingen, Germany.ORCID http://orcid.org/0000-0002-7635-9656
Steffi DemmelInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Simon MoserBern University of Applied Sciences, School of Agricultural, Forest and Food Sciences, Zollikofen, Switzerland.
Heidi Signer-HaslerBern University of Applied Sciences, School of Agricultural, Forest and Food Sciences, Zollikofen, Switzerland.
Aldona Pieńkowska-SchellingInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Claude SchellingClinic for Reproductive Medicine, University of Zurich, Zurich, Switzerland.
Marcos SandeInstitute of Anatomy, University of Bern, Bern, Switzerland.
Ronald RongenDutch Belted Cattle Association, EM Eefde, The Netherlands.
Stefan RiederAgroscope, Swiss National Stud Farm, Avenches, Switzerland.ORCID http://orcid.org/0000-0002-4658-2187
Robert N KelshDepartment of Biology and Biochemistry, University of Bath, Claverton Down, Bath, United Kingdom.ORCID http://orcid.org/0000-0002-9381-0066
Nadia MercaderInstitute of Anatomy, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0000-0002-0905-6399
Tosso LeebInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0000-0003-0553-4880
University of Bern · CHBern University of Applied Sciences · CHUniversity of Göttingen · DEAgroscope · CHUniversity of Bath · GBUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Belted cattle have a circular belt of unpigmented hair and skin around their midsection. The belt is inherited as a monogenic autosomal dominant trait. We mapped the causative variant to a 37 kb segment on bovine chromosome 3. Whole genome sequence data of 2 belted and 130 control cattle yielded only one private genetic variant in the critical interval in the two belted animals. The belt-associated variant was a copy number variant (CNV) involving the quadruplication of a 6 kb non-coding sequence located approximately 16 kb upstream of the TWIST2 gene. Increased copy numbers at this CNV were strongly associated with the belt phenotype in a cohort of 333 cases and 1322 controls. We hypothesized that the CNV causes aberrant expression of TWIST2 during neural crest development, which might negatively affect melanoblasts. Functional studies showed that ectopic expression of bovine TWIST2 in neural crest in transgenic zebrafish led to a decrease in melanocyte numbers. Our results thus implicate an unsuspected involvement of TWIST2 in regulating pigmentation and reveal a non-coding CNV underlying a captivating Mendelian character.

Indexed as

5' Flanking RegionAnimalsAnimals, Genetically ModifiedCattleDNA Copy Number VariationsFemaleMaleMelanocytesPhenotypePolymerase Chain ReactionSkin PigmentationTwist-Related Protein 2ZebrafishTwist-Related Protein 2

Identifiers

PMID28658273
PMCPMC5489250
OpenAlexW2950467218

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.