Evidence map›Paper›PMID 28656966›Full record

ArticleNature communications2017

E3 Ubiquitin ligase ZNRF4 negatively regulates NOD2 signalling and induces tolerance to MDP.

Pradeep Bist, Wan Shoo Cheong, Aylwin Ng, Neha Dikshit, Bae-Hoon Kim, Niyas Kudukkil Pulloor, Hanif Javanmard Khameneh, Matija Hedl, Avinash R Shenoy, Vanniarajan Balamuralidhar and 11 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. FromCells · 2022
    Review
  12. Article
  13. The E3 ubiquitin ligase RNF186 andProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Review
  15. Article
  16. How to Inactivate Human Ubiquitin E3 Ligases by Mutation.Frontiers in cell and developmental biology · 2020
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 4 countries.

Pradeep BistProgram in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore.
Wan Shoo CheongProgram in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore.
Aylwin NgGastrointestinal Unit, Center for Computational and Integrative Biology, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114, USA.
Neha DikshitProgram in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore.
Bae-Hoon KimHHMI, Yale Systems Biology Institute, Departments of Microbial Pathogenesis and Immunobiology, Yale University School of Medicine, New Haven, Connecticut 065207, USA.
Niyas Kudukkil PulloorProgram in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore.
Hanif Javanmard KhamenehSingapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore 138648, Singapore.
Matija HedlDepartment of Internal Medicine, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Avinash R ShenoyHHMI, Yale Systems Biology Institute, Departments of Microbial Pathogenesis and Immunobiology, Yale University School of Medicine, New Haven, Connecticut 065207, USA.
Vanniarajan BalamuralidharProgram in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore.
Najib Bin Abdul MalikProgram in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore.
Michelle HongProgram in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore.
Albert NeutznerDepartment of Biomedicine, University Hospital Basel, Basel 4031, Switzerland.
Keh-Chuang ChinSingapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore 138648, Singapore.
Koichi S KobayashiDepartment of Microbial Pathogenesis and Immunology, Texas A&M Health Science Centre, College Station, Texas 77843-1114, USA.
Antonio BertolettiProgram in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore.
Alessandra MortellaroSingapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore 138648, Singapore.ORCID 0000-0003-1744-2430
Clara AbrahamDepartment of Internal Medicine, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
John D MacMickingHHMI, Yale Systems Biology Institute, Departments of Microbial Pathogenesis and Immunobiology, Yale University School of Medicine, New Haven, Connecticut 065207, USA.
Ramnik J XavierGastrointestinal Unit, Center for Computational and Integrative Biology, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114, USA.
Bindu SukumaranProgram in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore.
Duke-NUS Medical School · SGYale University · USAgency for Science, Technology and Research · SGBroad Institute · USCentre College · USUniversity Hospital of Basel · CH

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Pilot & Feasibility ProgramP30DK043351 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI RAYMOND T CHUNG · 1991 to 2026
$35.3M
Functional outcomes of inflammatory bowel disease associated variantsR01DK099097 · NIDDK · YALE UNIVERSITY · PI CLARA ABRAHAM · 2013 to 2026
$7.0M
Autophagy genes and the microbiome in Crohn's DiseaseR01DK092405 · NIDDK · BROAD INSTITUTE, INC. · PI XAVIER, RAMNIK J · 2012 to 2014
$2.0M
Nod2-mediated regulation of intestinal homeostasisR01DK074738 · NIDDK · DANA-FARBER CANCER INST · PI KOBAYASHI, KOICHI S · 2007 to 2011
$1.4M
Medical Research Council MR/J006874/1NCATS NIH HHS UL1 TR001863NIDDK NIH HHS P30 DK043351NIDDK NIH HHS R01 DK074738NIDDK NIH HHS R01 DK092405NIDDK NIH HHS R01 DK099097
6 · The paper itself

Abstract

Optimal regulation of the innate immune receptor nucleotide-binding oligomerization domain-containing protein 2 (NOD2) is essential for controlling bacterial infections and inflammatory disorders. Chronic NOD2 stimulation induces non-responsiveness to restimulation, termed NOD2-induced tolerance. Although the levels of the NOD2 adaptor, RIP2, are reported to regulate both acute and chronic NOD2 signalling, how RIP2 levels are modulated is unclear. Here we show that ZNRF4 induces K48-linked ubiquitination of RIP2 and promotes RIP2 degradation. A fraction of RIP2 localizes to the endoplasmic reticulum (ER), where it interacts with ZNRF4 under either 55 unstimulated and muramyl dipeptide-stimulated conditions. Znrf4 knockdown monocytes have sustained nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB) activation, and Znrf4 knockdown mice have reduced NOD2-induced tolerance and more effective control of Listeria monocytogenes infection. Our results thus demonstrate E3-ubiquitin ligase ZNRF4-mediated RIP2 degradation as a negative regulatory mechanism of NOD2-induced NF-κB, cytokine and anti-bacterial responses in vitro and in vivo, and identify a ZNRF4-RIP2 axis of fine-tuning NOD2 signalling to promote protective host immunity.

Indexed as

Immune ToleranceAcetylmuramyl-Alanyl-IsoglutamineAnimalsDNA-Binding ProteinsHEK293 CellsHumansListeria monocytogenesListeriosisMice, Inbred C57BLMice, Mutant StrainsMonocytesNF-kappa BNod2 Signaling Adaptor ProteinReceptor-Interacting Protein Serine-Threonine Kinase 2Signal TransductionUbiquitinationAcetylmuramyl-Alanyl-IsoglutamineDNA-Binding ProteinsNF-kappa BNOD2 protein, humanNod2 Signaling Adaptor ProteinReceptor-Interacting Protein Serine-Threonine Kinase 2RIPK2 protein, humanZNRF4 protein, humanZnrf4 protein, mouse

Identifiers

PMID28656966
PMCPMC5493756
OpenAlexW2733687868

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.