Evidence map›Paper›PMID 28656748›Full record

ArticleBiochemistry2017

Adenosine Monophosphate Binding Stabilizes the KTN Domain of the Shewanella denitrificans Kef Potassium Efflux System.

Christos Pliotas, Samuel C Grayer, Silvia Ekkerman, Anthony K N Chan, Jess Healy, Phedra Marius, Wendy Bartlett, Amjad Khan, Wilian A Cortopassi, Shane A Chandler and 8 more

Open access · hybridAbstract read
In one paragraph

Article in Biochemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Structure and mechanism of the KNature communications · 2024
    Article
  2. Article
  3. Review
  4. Physicochemical homeostasis in bacteria.FEMS microbiology reviews · 2023
    Article
  5. Review
  6. Two Color Imaging of Different Hypoxia Levels in Cancer Cells.Journal of the American Chemical Society · 2023
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 4 countries.

Christos PliotasBiomedical Sciences Research Complex, University of St Andrews , North Haugh, St Andrews KY16 9ST, U.K.
Samuel C GrayerDepartment of Chemistry, Chemistry Research Laboratory, University of Oxford , Mansfield Road, Oxford OX1 3TA, U.K.
Silvia EkkermanMedical Sciences and Nutrition, School of Medicine , Foresterhill, Aberdeen AB25 2ZD, U.K.
Anthony K N ChanDepartment of Chemistry, Chemistry Research Laboratory, University of Oxford , Mansfield Road, Oxford OX1 3TA, U.K.
Jess HealyDepartment of Chemistry, Chemistry Research Laboratory, University of Oxford , Mansfield Road, Oxford OX1 3TA, U.K.
Phedra MariusBiomedical Sciences Research Complex, University of St Andrews , North Haugh, St Andrews KY16 9ST, U.K.
Wendy BartlettMedical Sciences and Nutrition, School of Medicine , Foresterhill, Aberdeen AB25 2ZD, U.K.
Amjad KhanDepartment of Chemistry, Chemistry Research Laboratory, University of Oxford , Mansfield Road, Oxford OX1 3TA, U.K.
Wilian A CortopassiDepartment of Chemistry, Chemistry Research Laboratory, University of Oxford , Mansfield Road, Oxford OX1 3TA, U.K.
Shane A ChandlerPhysical & Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford , South Parks Road, Oxford OX1 3QZ, U.K.
Tim RasmussenMedical Sciences and Nutrition, School of Medicine , Foresterhill, Aberdeen AB25 2ZD, U.K.
Justin L P BeneschPhysical & Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford , South Parks Road, Oxford OX1 3QZ, U.K.
Robert S PatonDepartment of Chemistry, Chemistry Research Laboratory, University of Oxford , Mansfield Road, Oxford OX1 3TA, U.K.ORCID 0000-0002-0104-4166
Timothy D W ClaridgeDepartment of Chemistry, Chemistry Research Laboratory, University of Oxford , Mansfield Road, Oxford OX1 3TA, U.K.ORCID 0000-0001-5583-6460
Samantha MillerMedical Sciences and Nutrition, School of Medicine , Foresterhill, Aberdeen AB25 2ZD, U.K.
Ian R BoothMedical Sciences and Nutrition, School of Medicine , Foresterhill, Aberdeen AB25 2ZD, U.K.
James H NaismithBiomedical Sciences Research Complex, University of St Andrews , North Haugh, St Andrews KY16 9ST, U.K.ORCID 0000-0001-6744-5061
Stuart J ConwayDepartment of Chemistry, Chemistry Research Laboratory, University of Oxford , Mansfield Road, Oxford OX1 3TA, U.K.ORCID 0000-0002-5148-117X
Mansfield University · USUniversity of Aberdeen · GBUniversity of Oxford · GBUniversity of St Andrews · GBRutherford Appleton Laboratory · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H017917/1Biotechnology and Biological Sciences Research Council BB/L017067/1Wellcome Trust WT092552MAWellcome Trust WT100209MA
6 · The paper itself

Abstract

Ligand binding is one of the most fundamental properties of proteins. Ligand functions fall into three basic types: substrates, regulatory molecules, and cofactors essential to protein stability, reactivity, or enzyme-substrate complex formation. The regulation of potassium ion movement in bacteria is predominantly under the control of regulatory ligands that gate the relevant channels and transporters, which possess subunits or domains that contain Rossmann folds (RFs). Here we demonstrate that adenosine monophosphate (AMP) is bound to both RFs of the dimeric bacterial Kef potassium efflux system (Kef), where it plays a structural role. We conclude that AMP binds with high affinity, ensuring that the site is fully occupied at all times in the cell. Loss of the ability to bind AMP, we demonstrate, causes protein, and likely dimer, instability and consequent loss of function. Kef system function is regulated via the reversible binding of comparatively low-affinity glutathione-based ligands at the interface between the dimer subunits. We propose this interfacial binding site is itself stabilized, at least in part, by AMP binding.

Indexed as

Protein FoldingProtein MultimerizationAdenosine MonophosphatePotassium-Hydrogen AntiportersProtein BindingProtein DomainsProtein StabilityProtein Structure, QuaternaryShewanellaAdenosine MonophosphatePotassium-Hydrogen Antiporters

Identifiers

PMID28656748
PMCPMC5645763
OpenAlexW2733354392

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.