Evidence map›Paper›PMID 28655926›Full record

ArticleScientific reports2017

Effect of high fat diet on phenotype, brain transcriptome and lipidome in Alzheimer's model mice.

Kyong Nyon Nam, Anais Mounier, Cody M Wolfe, Nicholas F Fitz, Alexis Y Carter, Emilie L Castranio, Hafsa I Kamboh, Valerie L Reeves, Jianing Wang, Xianlin Han and 3 more

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. STAT4-dependent regulation of neuroinflammation in atherosclerosis.bioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Kyong Nyon NamDepartment of Environmental and Occupational Health, University of Pittsburgh, Pittsburgh, 15219, PA, USA.
Anais MounierDepartment of Environmental and Occupational Health, University of Pittsburgh, Pittsburgh, 15219, PA, USA.
Cody M WolfeDepartment of Environmental and Occupational Health, University of Pittsburgh, Pittsburgh, 15219, PA, USA.
Nicholas F FitzDepartment of Environmental and Occupational Health, University of Pittsburgh, Pittsburgh, 15219, PA, USA.
Alexis Y CarterDepartment of Environmental and Occupational Health, University of Pittsburgh, Pittsburgh, 15219, PA, USA.
Emilie L CastranioDepartment of Environmental and Occupational Health, University of Pittsburgh, Pittsburgh, 15219, PA, USA.
Hafsa I KambohDepartment of Environmental and Occupational Health, University of Pittsburgh, Pittsburgh, 15219, PA, USA.
Valerie L ReevesDepartment of Environmental and Occupational Health, University of Pittsburgh, Pittsburgh, 15219, PA, USA.
Jianing WangSanford Burnham Prebys Medical Discovery Institute, Orlando, 32827, FL, USA.
Xianlin HanSanford Burnham Prebys Medical Discovery Institute, Orlando, 32827, FL, USA.
Jonathan SchugDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Iliya LefterovDepartment of Environmental and Occupational Health, University of Pittsburgh, Pittsburgh, 15219, PA, USA. iliyal@pitt.edu.
Radosveta KoldamovaDepartment of Environmental and Occupational Health, University of Pittsburgh, Pittsburgh, 15219, PA, USA. radak@pitt.edu.

Funding

Epigenetic and phenotypic effects of arsenic: impacts on cognition and ADR01ES024233 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KOLDAMOVA, RADOSVETA, LEFTEROV, ILIYA · 2014 to 2018
$2.6M
Genome wide analysis of LXR binding - metabolic and epigenetic regulation in ADR01AG037919 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LEFTEROV, ILIYA, SCHUG, JONATHAN · 2012 to 2016
$2.4M
LXR and human ApoE isoform effects on AD phenotype: in vitro and in vivo modelsR01AG037481 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KOLDAMOVA, RADOSVETA · 2011 to 2015
$1.8M
Peripheral & Brain Cholesterol Metabolism in Neurodegenerative Mouse ModelsK01AG044490 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FITZ, NICHOLAS FRANCIS · 2014 to 2018
$463k
Request for a Nikon A1 confocal microscopeS10OD019973 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI WATKINS, SIMON C · 2015 to 2015
$358k
NIA NIH HHS K01 AG044490NIA NIH HHS R01 AG037481NIA NIH HHS R01 AG037919NIEHS NIH HHS R01 ES024233NIH HHS S10 OD019973
6 · The paper itself

Abstract

We examined the effect of chronic high fat diet (HFD) on amyloid deposition and cognition of 12-months old APP23 mice, and correlated the phenotype to brain transcriptome and lipidome. HFD significantly increased amyloid plaques and worsened cognitive performance compared to mice on normal diet (ND). RNA-seq results revealed that in HFD mice there was an increased expression of genes related to immune response, such as Trem2 and Tyrobp. We found a significant increase of TREM2 immunoreactivity in the cortex in response to HFD, most pronounced in female mice that correlated to the amyloid pathology. Down-regulated by HFD were genes related to neuron projections and synaptic transmission in agreement to the significantly deteriorated neurite morphology and cognition in these mice. To examine the effect of the diet on the brain lipidome, we performed Shotgun Lipidomics. While there was no difference in the total amounts of phospholipids of each class, we revealed that the levels of 24 lipid sub-species in the brain were significantly modulated by HFD. Network visualization of correlated lipids demonstrated overall imbalance with most prominent effect on cardiolipin molecular sub-species. This integrative approach demonstrates that HFD elicits a complex response at molecular, cellular and system levels in the CNS.

Indexed as

Lipid MetabolismMetabolomePhenotypeTranscriptomeAlzheimer DiseaseAmyloid beta-PeptidesAnimalsApoptosisBrainCell DifferentiationCognitionComputational BiologyDiet, High-FatDisease Models, AnimalFemaleGene Expression ProfilingAmyloid beta-Peptides

Identifiers

PMID28655926
PMCPMC5487356

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.