Evidence map›Paper›PMID 28655850›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

System-wide organization of actin cytoskeleton determines organelle transport in hypocotyl plant cells.

David Breuer, Jacqueline Nowak, Alexander Ivakov, Marc Somssich, Staffan Persson, Zoran Nikoloski

Erratum issuedAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Automatic extraction of actin networks in plants.PLoS computational biology · 2023
    Article
  8. Article
  9. Tracing and tracking filamentous structures across scales: A systematic review.Computational and structural biotechnology journal · 2023
    Review
  10. Article
  11. Article
  12. Article
  13. Comprehensive Effects ofFrontiers in plant science · 2022
    Article
  14. International journal of molecular sciences · 2021
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. CytoSeg 2.0: automated extraction of actin filaments.Bioinformatics (Oxford, England) · 2020
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

David BreuerSystems Biology and Mathematical Modeling, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam, Germany; breuer@mpimp-golm.mpg.de.ORCID 0000-0002-3211-5940
Jacqueline NowakSystems Biology and Mathematical Modeling, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam, Germany.
Alexander IvakovARC Centre of Excellence in Plant Cell Walls, School of Biosciences, University of Melbourne, Parkville, VIC 3010, Australia.
Marc SomssichARC Centre of Excellence in Plant Cell Walls, School of Biosciences, University of Melbourne, Parkville, VIC 3010, Australia.
Staffan PerssonARC Centre of Excellence in Plant Cell Walls, School of Biosciences, University of Melbourne, Parkville, VIC 3010, Australia.
Zoran NikoloskiSystems Biology and Mathematical Modeling, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The actin cytoskeleton is an essential intracellular filamentous structure that underpins cellular transport and cytoplasmic streaming in plant cells. However, the system-level properties of actin-based cellular trafficking remain tenuous, largely due to the inability to quantify key features of the actin cytoskeleton. Here, we developed an automated image-based, network-driven framework to accurately segment and quantify actin cytoskeletal structures and Golgi transport. We show that the actin cytoskeleton in both growing and elongated hypocotyl cells has structural properties facilitating efficient transport. Our findings suggest that the erratic movement of Golgi is a stable cellular phenomenon that might optimize distribution efficiency of cell material. Moreover, we demonstrate that Golgi transport in hypocotyl cells can be accurately predicted from the actin network topology alone. Thus, our framework provides quantitative evidence for system-wide coordination of cellular transport in plant cells and can be readily applied to investigate cytoskeletal organization and transport in other organisms.

Indexed as

Actin CytoskeletonArabidopsisBiological TransportCytoplasmGolgi ApparatusHypocotylImage Processing, Computer-AssistedImaging, Three-DimensionalMicrotubulesModels, StatisticalOrganellesPhenotypePlant CellsProtein TransportRegression AnalysisactincytoskeletonGolgiimage processingnetworks

Identifiers

PMID28655850
PMCPMC5514762

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.