Evidence map›Paper›PMID 28655822›Full record

ArticlemBio2017

Translation Initiation from Conserved Non-AUG Codons Provides Additional Layers of Regulation and Coding Capacity.

Ivaylo P Ivanov, Jiajie Wei, Stephen Z Caster, Kristina M Smith, Audrey M Michel, Ying Zhang, Andrew E Firth, Michael Freitag, Jay C Dunlap, Deborah Bell-Pedersen and 2 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Tiny but mighty: Diverse functions of uORFs that regulate gene expression.Computational and structural biotechnology journal · 2024
    Review
  4. Deciphering thebioRxiv : the preprint server for biology · 2024
    Article
  5. Article
  6. Article
  7. bioRxiv : the preprint server for biology · 2023
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Understanding small ORF diversity through a comprehensive transcription feature classification.DNA research : an international journal for rapid publication of reports on genes and genomes · 2021
    Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Circadian clock control of eIF2α phosphorylation is necessary for rhythmic translation initiation.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Ivaylo P IvanovSchool of Biochemistry and Cell Biology, University College Cork, Cork, Ireland.
Jiajie WeiDepartment of Biology, Texas A&M University, College Station, Texas, USA.
Stephen Z CasterDepartment of Biology, Texas A&M University, College Station, Texas, USA.
Kristina M SmithDepartment of Biochemistry and Biophysics, Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, USA.
Audrey M MichelSchool of Biochemistry and Cell Biology, University College Cork, Cork, Ireland.
Ying ZhangDepartment of Biology, Texas A&M University, College Station, Texas, USA.
Andrew E FirthDivision of Virology, Department of Pathology, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0002-7986-9520
Michael FreitagDepartment of Biochemistry and Biophysics, Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, USA.
Jay C DunlapDepartment of Molecular and Systems Biology, Geisel School of Medicine, Dartmouth College, Hanover, New Hampshire, USA.
Deborah Bell-PedersenDepartment of Biology, Texas A&M University, College Station, Texas, USA.
John F AtkinsSchool of Biochemistry and Cell Biology, University College Cork, Cork, Ireland.
Matthew S SachsDepartment of Biology, Texas A&M University, College Station, Texas, USA msachs@bio.tamu.edu.
Texas A&M University · USOregon State University · USUniversity College Cork · IEDartmouth College · USUniversity of Cambridge · GBUniversity of Utah · US

Funding

Tools for Functional Analysis and Cell BiologyP01GM068087 · NIGMS · DARTMOUTH COLLEGE · PI DUNLAP, JAY C. · 2004 to 2013
$19.3M
Genetic and Molecular Dissection of the Neurospora ClockR35GM118021 · NIGMS · DARTMOUTH COLLEGE · PI Jay C. Dunlap · 2016 to 2026
$7.3M
Mechanisms of Circadian Clock Control of mRNA TranslationR35GM126966 · NIGMS · TEXAS A&M UNIVERSITY · PI Deborah Bell-Pedersen · 2018 to 2026
$6.6M
Molecular Genetic Analysis of Fungal Circadian RythmsR01GM058529 · NIGMS · TEXAS A&M UNIVERSITY SYSTEM · PI BELL-PEDERSEN, DEBORAH · 1999 to 2017
$4.6M
CONTROL OF ARG-2 GENE EXPRESSION IN NEUROSPORAR01GM047498 · NIGMS · TEXAS A&M UNIVERSITY · PI SACHS, MATTHEW STEVEN · 1997 to 2009
$2.8M
NIGMS NIH HHS P01 GM068087NIGMS NIH HHS R01 GM047498NIGMS NIH HHS R01 GM058529NIGMS NIH HHS R35 GM118021NIGMS NIH HHS R35 GM126966Wellcome Trust 106207
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

CodonGene Expression Regulation, FungalPeptide Chain Initiation, TranslationalAscomycotaBasidiomycotaGene FusionNeurospora crassaOpen Reading FramesProtein BiosynthesisSaccharomyces cerevisiaeCodonfilamentous fungigene regulationmolecular geneticsNeurosporatranslational control

Identifiers

PMID28655822
PMCPMC5487733
OpenAlexW2728028874

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.