ArticleBMC genomics2017
Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture.
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Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.
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49citing papers in PubMed
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49 citing papers in PubMed, 104 citations in OpenAlex.
- Development constrains the evolution of gene regulation after whole-genome duplication.Nature ecology & evolution · 2026Article
- Developmental contexts of gene-regulatory evolution following whole genome duplication in salmonids.Nature ecology & evolution · 2026Article
- The Genomics Revolution in Nonmodel Species: Predictions vs. Reality for Salmonids.Molecular ecology · 2025Review
- High performance imputation of structural and single nucleotide variants using low-coverage whole genome sequencing.Genetics, selection, evolution : GSE · 2025Article
- SALARECON connects the Atlantic salmon genome to growth and feed efficiency.PLoS computational biology · 2022Article
- Genomic Predictions of Phenotypes and Pseudo-Phenotypes for Viral Nervous Necrosis Resistance, Cortisol Concentration, Antibody Titer and Body Weight in European Sea Bass.Animals : an open access journal from MDPI · 2022Article
- A chromosome-anchored genome assembly for Lake Trout (Salvelinus namaycush).Molecular ecology resources · 2022Article
- An EvoDevo Study of Salmonid Visual Opsin Dynamics and Photopigment Spectral Sensitivity.Frontiers in neuroanatomy · 2022Article
- Genomic Selection in Aquaculture Species.Methods in molecular biology (Clifton, N.J.) · 2022Article
- Chromosome-Level Reference Genome Assembly for the American Pika (Ochotona princeps).The Journal of heredity · 2021Article
- Micronutrient supplementation affects transcriptional and epigenetic regulation of lipid metabolism in a dose-dependent manner.Epigenetics · 2021Article
- Chromatin accessibility and regulatory vocabulary across indicine cattle tissues.Genome biology · 2021Article
- Potential of genomic technologies to improve disease resistance in molluscan aquaculture.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021Review
- Genetic Drift Dominates Genome-Wide Regulatory Evolution Following an Ancient Whole-Genome Duplication in Atlantic Salmon.Genome biology and evolution · 2021Article
- Fate of MHCII in salmonids following 4WGD.Immunogenetics · 2021Article
- MHC class I evolution; from Northern pike to salmonids.BMC ecology and evolution · 2021Article
- Rhythmic Clock Gene Expression in Atlantic Salmon Parr Brain.Frontiers in physiology · 2021Article
- Evolution and Expression of the Immune System of a Facultatively Anadromous Salmonid.Frontiers in immunology · 2021Article
- Harnessing genomics to fast-track genetic improvement in aquaculture.Nature reviews. Genetics · 2020Review
- Efficient CRISPR/Cas9 genome editing in a salmonid fish cell line using a lentivirus delivery system.BMC biotechnology · 2020Article
Corrections and comments
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Authors and funding
35 authors at 20 institutions in 11 countries.
Daniel J MacqueenInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, AB24 2TZ, UK. daniel.macqueen@abdn.ac.uk.
Craig R PrimmerDepartment of Biology, University of Turku, 20014, Turku, Finland. craig.primmer@helsinki.fi.ORCID 0000-0002-3687-8435
Ross D HoustonThe Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Midlothian, EH25 9RG, UK. ross.houston@roslin.ed.ac.uk.
Barbara F NowakInstitute for Marine and Antarctic Studies, University of Tasmania, Launceston, TAS, Australia. b.nowak@utas.edu.au.
Louis BernatchezDépartement de biologie, Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Québec, G1V 0A6, Canada.
Steinar BergsethThe Research Council of Norway, Drammensveien 288, P.O. Box 564, NO-1327, Lysaker, Norway.
William S DavidsonDepartment of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada.
Cristian Gallardo-EscárateLaboratory of Biotechnology and Aquatic Genomics, Interdisciplinary Center for Aquaculture Research, Department of Oceanography, Universidad de Concepción, 4030000, Concepción, Chile.
Tom GoldammerLeibniz Institute for Farm Animal Biology, Institute for Genome Biology, Fish Genetics Unit, Wilhelm-Stahl-Allee 2, 18196, Dummerstorf, Germany.
Yann GuiguenINRA, UR1037 Fish Physiology and Genomics, Rennes, France.
Patricia IturraHuman Genetics Program ICBM Faculty of Medicine, University of Chile, Santiago, Chile.
James W KijasCSIRO Agriculture, QLD, St Lucia, 4067, Australia.
Ben F KoopDepartment of Biology, University of Victoria, Victoria, BC, V8W 3N5, Canada.
Sigbjørn LienCentre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås, Norway.
Alejandro MaassCenter for Mathematical Modelling, Department of Mathematical Engineering, University of Chile, 8370456, Santiago, Chile.
Samuel A M MartinInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, AB24 2TZ, UK.
Philip McGinnitySchool of Biological, Earth and Environmental Sciences, University College Cork, Cork, Ireland.
Martin MontecinoCenter for Biomedical Research, Universidad Andres Bello, 8370146, Santiago, Chile.
Kerry A NaishSchool of Aquatic and Fishery Sciences, University of Washington, Box 355020, Seattle, WA, 98195, USA.
Krista M NicholsConservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 2725 Montlake Blvd E, Seattle, WA, 98112, USA.
Kristinn ÓlafssonMatis Ltd, Vínlandsleið 12, 113, Reykjavík, Iceland.
Stig W OmholtCentre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås, Norway.
Yniv PaltiNational Center for Cool and Cold Water Aquaculture, USDA ARS, 11861 Leetown Road, Kearneysville, WV, 25430, USA.
Graham S PlastowDepartment of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, AB, Canada.
Caird E RexroadOffice of National Programs, USDA ARS, 5601 Sunnyside Avenue, Beltsville, MD, 20705-5148, USA.
Matthew L RiseDepartment of Ocean Sciences, Memorial University of Newfoundland, 1 Marine Lab Road, St. John's, NL, A1C 5S7, Canada.
Rachael J RitchieGenome British Columbia, Suite 400 - 575, West 8th Avenue, Vancouver, BC, V5Z 0C4, Canada.
Simen R SandveCentre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås, Norway.
Patricia M SchulteDepartment of Zoology, University of British Columbia, 6270 University Blvd, Vancouver, BC, V6T 1Z4, Canada.
Alfredo TelloInstituto Tecnológico del Salmón S.A., INTESAL de SalmonChile, Puerto Montt, Chile.
Rodrigo VidalLaboratory of Molecular Ecology, Genomics, and Evolutionary Studies, Department of Biology, University of Santiago, 9170022, Santiago, Chile.
Jon Olav VikCentre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, NO-1432, Ås, Norway.
Anna WargeliusInstitute of Marine Research, P.O. Box 1870, Nordnes, NO-5817, Bergen, Norway.
José Manuel YáñezFaculty of Veterinary and Animal Sciences, University of Chile, Av. Santa Rosa 11735, Santiago, Chile & Aquainnovo, Cardonal s/n, Puerto Montt, Chile.
FAASG Consortium
Norwegian University of Life Sciences · NOUniversity of Chile · CLUniversity of Aberdeen · GBAgricultural Research Service · USAgriculture and Agri-Food Canada · CACenter for Mathematical Modeling · CLCommonwealth Scientific and Industrial Research Organisation · AUGenome British Columbia · CAInstituto Tecnológico del Salmón · CLInterdisciplinary Center for Aquaculture Research · CLInterface Biologics (Canada) · CALaboratoire de Physiologie et Génomique des Poissons · FRMatís (Iceland) · ISMemorial University of Newfoundland · CANational Center for Cool and Cold Water Aquaculture · USNOAA National Marine Fisheries Service · USNorwegian Institute of Marine Research · NONorwegian University of Science and Technology · NOResearch Institute for Farm Animal Biology (FBN) · DERoslin Institute · GB
Funding
Biotechnology and Biological Sciences Research Council BB/H022007/1Biotechnology and Biological Sciences Research Council BB/P02582X/1
Abstract
We describe an emerging initiative - the 'Functional Annotation of All Salmonid Genomes' (FAASG), which will leverage the extensive trait diversity that has evolved since a whole genome duplication event in the salmonid ancestor, to develop an integrative understanding of the functional genomic basis of phenotypic variation. The outcomes of FAASG will have diverse applications, ranging from improved understanding of genome evolution, to improving the efficiency and sustainability of aquaculture production, supporting the future of fundamental and applied research in an iconic fish lineage of major societal importance.
Indexed as
AquacultureConservation of Natural ResourcesGenomicsInternationalityMolecular Sequence AnnotationAnimalsEvolution, MolecularPhenotypePhylogenySalmonidaeAquacultureComparative biologyData sharingEvolutionFunctional annotationGenome biologyPhenotypingSalmonid fishStandardized data and metadataWhole genome duplication
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LicenceCC BY
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