Evidence map›Paper›PMID 28655202›Full record

ArticleMolecular biology and evolution2017

Small RNA Activity in Archeological Barley Shows Novel Germination Inhibition in Response to Environment.

Oliver Smith, Sarah A Palmer, Alan J Clapham, Pamela Rose, Yuan Liu, Jun Wang, Robin G Allaby

Abstract readHistorical Article
In one paragraph

Article in Molecular biology and evolution, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. What Do We Know about Barley miRNAs?International journal of molecular sciences · 2022
    Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Oliver SmithSchool of Life Sciences, The University of Warwick, Coventry, United Kingdom.
Sarah A PalmerSchool of Life Sciences, The University of Warwick, Coventry, United Kingdom.
Alan J ClaphamSchool of Life Sciences, The University of Warwick, Coventry, United Kingdom.
Pamela RoseThe Austrian Archaeological Institute, Cairo Branch, Zamalek, Cairo, Egypt.
Yuan LiuBGI-Europe-UK, London, United Kingdom.
Jun WangBGI-Shenzhen, Shenzhen, China.
Robin G AllabySchool of Life Sciences, The University of Warwick, Coventry, United Kingdom.

Funding

Biotechnology and Biological Sciences Research Council BBG0177941
6 · The paper itself

Abstract

The recovery of ancient RNA from archeological material could enable the direct study of microevolutionary processes. Small RNAs are a rich source of information because their small size is compatible with biomolecular preservation, and their roles in gene regulation make them likely foci of evolutionary change. We present here the small RNA fraction from a sample of archeological barley generated using high-throughput sequencing that has previously been associated with localized adaptation to drought. Its microRNA profile is broadly similar to 19 globally distributed modern barley samples with the exception of three microRNAs (miRNA159, miRNA319, and miR396), all of which are known to have variable expression under stress conditions. We also found retrotransposon activity to be significantly reduced in the archeological barley compared with the controls, where one would expect the opposite under stress conditions. We suggest that the archeological barley's conflicting stress signals could be the result of long-term adaptation to its local environment.

Indexed as

Adaptation, PhysiologicalBase SequenceDNA, AncientGene Expression Regulation, PlantGerminationHigh-Throughput Nucleotide SequencingHistory, AncientHordeumMicroRNAsRNARNA, PlantSequence Analysis, RNAStress, PhysiologicalDNA, AncientMicroRNAsRNARNA, Plantadaptationancient RNAmiRNA

Identifiers

PMID28655202
PMCPMC5850308

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.