Evidence map›Paper›PMID 28655184›Full record

ArticleNucleic acids research2017

Characterization of a coupled DNA replication and translesion synthesis polymerase supraholoenzyme from archaea.

Matthew T Cranford, Aurea M Chu, Joshua K Baguley, Robert J Bauer, Michael A Trakselis

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Beyond the Lesion: Back to High Fidelity DNA Synthesis.Frontiers in molecular biosciences · 2021
    Review
  6. Review
  7. Article
  8. Open biology · 2020
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Matthew T CranfordDepartment of Chemistry and Biochemistry, Baylor University, Waco, TX 76798, USA.
Aurea M ChuDepartment of Chemistry and Biochemistry, Baylor University, Waco, TX 76798, USA.
Joshua K BaguleyDepartment of Chemistry and Biochemistry, Baylor University, Waco, TX 76798, USA.
Robert J BauerDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260, USA.
Michael A TrakselisDepartment of Chemistry and Biochemistry, Baylor University, Waco, TX 76798, USA.
Baylor University · USUniversity of Pittsburgh · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ability of the replisome to seamlessly coordinate both high fidelity and translesion DNA synthesis requires a means to regulate recruitment and binding of enzymes from solution. Co-occupancy of multiple DNA polymerases within the replisome has been observed primarily in bacteria and is regulated by posttranslational modifications in eukaryotes, and both cases are coordinated by the processivity clamp. Because of the heterotrimeric nature of the PCNA clamp in some archaea, there is potential to occupy and regulate specific polymerases at defined subunits. In addition to specific PCNA and polymerase interactions (PIP site), we have now identified and characterized a novel protein contact between the Y-family DNA polymerase and the B-family replication polymerase (YB site) bound to PCNA and DNA from Sulfolobus solfataricus. These YB contacts are essential in forming and stabilizing a supraholoenzyme (SHE) complex on DNA, effectively increasing processivity of DNA synthesis. The SHE complex can not only coordinate polymerase exchange within the complex but also provides a mechanism for recruitment of polymerases from solution based on multiequilibrium processes. Our results provide evidence for an archaeal PCNA 'tool-belt' recruitment model of multienzyme function that can facilitate both high fidelity and translesion synthesis within the replisome during DNA replication.

Indexed as

DNA RepairDNA ReplicationArchaeal ProteinsBlotting, WesternDNA, ArchaealDNA-Directed DNA PolymeraseHoloenzymesKineticsModels, MolecularNucleic Acid ConformationProliferating Cell Nuclear AntigenProtein BindingProtein Structure, TertiarySpectrometry, FluorescenceSulfolobus solfataricusArchaeal ProteinsDNA, ArchaealDNA-Directed DNA PolymeraseHoloenzymesProliferating Cell Nuclear Antigen

Identifiers

PMID28655184
PMCPMC5737361
OpenAlexW2700855204

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.