Evidence map›Paper›PMID 28653806›Full record

ArticleAmerican journal of medical genetics. Part A2017

Assessment of large copy number variants in patients with apparently isolated congenital left-sided cardiac lesions reveals clinically relevant genomic events.

Neil A Hanchard, Luis A Umana, Lisa D'Alessandro, Mahshid Azamian, Mojisola Poopola, Shaine A Morris, Susan Fernbach, Seema R Lalani, Jeffrey A Towbin, Gloria A Zender and 11 more

Open access · greenAbstract read
In one paragraph

Article in American journal of medical genetics. Part A, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. The Role of Genetics in the Management of Heart Failure Patients.International journal of molecular sciences · 2023
    Review
  4. Considering the Genetic Architecture of Hypoplastic Left Heart Syndrome.Journal of cardiovascular development and disease · 2022
    Article
  5. European Heart Rhythm Association (EHRA)/Heart Rhythm Society (HRS)/Asia Pacific Heart Rhythm Society (APHRS)/Latin American Heart Rhythm Society (LAHRS) Expert Consensus Statement on the state of genetic testing for cardiac diseases.Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology · 2022
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Modifying Mendel Redux: Unbiased Approaches Can Find Modifiers.Circulation. Cardiovascular genetics · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 2 countries.

Neil A HanchardDepartment of Human and Molecular Genetics, Baylor College of Medicine, Houston, Texas.
Luis A UmanaDepartment of Human and Molecular Genetics, Baylor College of Medicine, Houston, Texas.
Lisa D'AlessandroDivision of Cardiology, Department of Pediatrics, Baylor College of Medicine, Houston, Texas.
Mahshid AzamianDepartment of Human and Molecular Genetics, Baylor College of Medicine, Houston, Texas.
Mojisola PoopolaDepartment of Human and Molecular Genetics, Baylor College of Medicine, Houston, Texas.
Shaine A MorrisDivision of Cardiology, Department of Pediatrics, Baylor College of Medicine, Houston, Texas.
Susan FernbachDepartment of Human and Molecular Genetics, Baylor College of Medicine, Houston, Texas.
Seema R LalaniDepartment of Human and Molecular Genetics, Baylor College of Medicine, Houston, Texas.
Jeffrey A TowbinPediatric Cardiology, University of Tennessee Health Science Center, Memphis, Tennessee.
Gloria A ZenderCenter for Cardiovascular Research, Nationwide Children's Hospital, Columbus, Ohio.
Sara Fitzgerald-ButtCenter for Cardiovascular Research, Nationwide Children's Hospital, Columbus, Ohio.
Vidu GargCenter for Cardiovascular Research, Nationwide Children's Hospital, Columbus, Ohio.
Jessica BowmanHeart Center, Nationwide Children's Hospital, Columbus, Ohio.
Gladys ZapataDepartment of Human and Molecular Genetics, Baylor College of Medicine, Houston, Texas.
Patricia HernandezDepartment of Human and Molecular Genetics, Baylor College of Medicine, Houston, Texas.
Cammon B ArringtonDivision of Human Genetics, University of Utah School of Medicine, Salt Lake City, Utah.
Dieter FurthnerChildren's Hospital, Linz, Austria.
Siddharth K PrakashDepartment of Internal Medicine, University of Texas Health Science Center at Houston, Houston, Texas.
Neil E BowlesDivision of Human Genetics, University of Utah School of Medicine, Salt Lake City, Utah.
Kim L McBrideCenter for Cardiovascular Research, Nationwide Children's Hospital, Columbus, Ohio.ORCID http://orcid.org/0000-0002-8407-8942
John W BelmontDepartment of Human and Molecular Genetics, Baylor College of Medicine, Houston, Texas.
Baylor College of Medicine · USNationwide Children's Hospital · USUniversity of Utah · USBoston Children's Hospital · USThe University of Texas Health Science Center at Houston · USUniversity of Tennessee Health Science Center · US

Funding

Center for Clinical and Translational Sciences (CCTS)UL1TR000371 · NCATS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MCPHERSON, DAVID D · 2012 to 2016
$13.4M
Steps towards a paternal gene activation therapy for Angelman syndromeU54HD083092 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI ARENKIEL, BENJAMIN R, NELSON, DAVID LOREN · 2014 to 2019
$7.8M
GENETIC STUDIES OF COMMON CONGENITAL HEART DEFECTSR01HD039056 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI BELMONT, JOHN WILLIAM · 2000 to 2004
$4.5M
Genome Wide Association Study for Hypoplastic Left Heart and Related DefectsR01HL090506 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI BELMONT, JOHN WILLIAM · 2008 to 2011
$3.0M
Exome sequencing and functional studies in familial CHDR01HL109758 · NHLBI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI GARG, VIDU, MCBRIDE, KIM LEWIS · 2012 to 2015
$2.7M
Novel Genomic Disorders Causing Cardiovascular MalformationsR01HL091771 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI BELMONT, JOHN WILLIAM · 2008 to 2011
$1.5M
Exome Sequencing in Familial Cardiovascular MalformationsR21HL106549 · NHLBI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI MCBRIDE, KIM LEWIS · 2011 to 2012
$396k
Doris Duke Charitable Foundation 2013096NCATS NIH HHS UL1 TR000371NHLBI NIH HHS R01 HL090506NHLBI NIH HHS R01 HL091771NHLBI NIH HHS R01 HL109758NHLBI NIH HHS R21 HL106549NICHD NIH HHS R01 HD039056NICHD NIH HHS U54 HD083092
6 · The paper itself

Abstract

Congenital left-sided cardiac lesions (LSLs) are a significant contributor to the mortality and morbidity of congenital heart disease (CHD). Structural copy number variants (CNVs) have been implicated in LSL without extra-cardiac features; however, non-penetrance and variable expressivity have created uncertainty over the use of CNV analyses in such patients. High-density SNP microarray genotyping data were used to infer large, likely-pathogenic, autosomal CNVs in a cohort of 1,139 probands with LSL and their families. CNVs were molecularly confirmed and the medical records of individual carriers reviewed. The gene content of novel CNVs was then compared with public CNV data from CHD patients. Large CNVs (>1 MB) were observed in 33 probands (∼3%). Six of these were de novo and 14 were not observed in the only available parent sample. Associated cardiac phenotypes spanned a broad spectrum without clear predilection. Candidate CNVs were largely non-recurrent, associated with heterozygous loss of copy number, and overlapped known CHD genomic regions. Novel CNV regions were enriched for cardiac development genes, including seven that have not been previously associated with human CHD. CNV analysis can be a clinically useful and molecularly informative tool in LSLs without obvious extra-cardiac defects, and may identify a clinically relevant genomic disorder in a small but important proportion of these individuals.

Indexed as

AdolescentAdultChildChild, PreschoolDNA Copy Number VariationsFemaleGenetic Association StudiesGenomicsGenotypeHeartHeart Defects, CongenitalHumansInfantInfant, NewbornMaleMiddle Agedaortic stenosischromosomecoarctation aortacongenital heart diseasegenetichypoplastic left heart syndrome

Identifiers

PMID28653806
PMCPMC5560080
OpenAlexW2633195224

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.