Evidence map›Paper›PMID 28653623›Full record

ArticleeLife2017

Replication Study: The common feature of leukemia-associated IDH1 and IDH2 mutations is a neomorphic enzyme activity converting alpha-ketoglutarate to 2-hydroxyglutarate.

Megan Reed Showalter, Jason Hatakeyama, Tomas Cajka, Kacey VanderVorst, Kermit L Carraway, Oliver Fiehn, Reproducibility Project: Cancer Biology

Abstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Methylation-Based Characterization of a NewInternational journal of molecular sciences · 2024
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Megan Reed ShowalterWest Coast Metabolomics Center, University of California, Davis, United States.
Jason HatakeyamaDepartment of Biochemistry and Molecular Medicine, University of California, California, United States.ORCID 0000-0001-8690-5107
Tomas CajkaWest Coast Metabolomics Center, University of California, Davis, United States.
Kacey VanderVorstDepartment of Biochemistry and Molecular Medicine, University of California, California, United States.
Kermit L CarrawayDepartment of Biochemistry and Molecular Medicine, University of California, California, United States.
Oliver FiehnWest Coast Metabolomics Center, University of California, Davis, United States.
Reproducibility Project: Cancer Biology

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In 2016, as part of the Reproducibility Project: Cancer Biology, we published a Registered Report (Fiehn et al., 2016), that described how we intended to replicate selected experiments from the paper "The common feature of leukemia-associated IDH1 and IDH2 mutations is a neomorphic enzyme activity converting alpha-ketoglutarate to 2-hydroxyglutarate" (Ward et al., 2010). Here, we report the results of those experiments. We found that cells expressing R172K mutant IDH2 did not display isocitrate-dependent NADPH production above vector control levels, in contrast to the increased production observed with wild-type IDH2. Conversely, expression of R172K mutant IDH2 resulted in increased alpha-ketoglutarate-dependent consumption of NADPH compared to wild-type IDH2 or vector control. These results are similar to those reported in the original study (Figure 2; Ward et al., 2010). Further, expression of R172K mutant IDH2 resulted in increased 2HG levels within cells compared to the background levels observed in wild-type IDH2 and vector control, similar to the original study (Figure 3D; Ward et al., 2010). In primary human AML samples, the 2HG levels observed in samples with mutant

Indexed as

BiotransformationGlutaratesHumansIsocitrate DehydrogenaseKetoglutaric AcidsLeukemia, Myeloid, AcuteMutant ProteinsNADPTumor Cells, Culturedalpha-hydroxyglutarateGlutaratesIDH1 protein, humanIDH2 protein, humanIsocitrate DehydrogenaseKetoglutaric AcidsMutant ProteinsNADP2-HGacute myeloid leukemiabiochemistrycancer biologyhumanmetasciencereplicationreproducibilityReproducibility Project: Cancer Biology

Identifiers

PMID28653623
PMCPMC5487214

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.