Evidence map›Paper›PMID 28653435›Full record

ArticleGenesis (New York, N.Y. : 2000)2017

RICE CRISPR: Rapidly increased cut ends by an exonuclease Cas9 fusion in zebrafish.

Thomas P Clements, Bhavna Tandon, Hendrik A Lintel, Joseph H McCarty, Daniel S Wagner

Open access · greenAbstract read
In one paragraph

Article in Genesis (New York, N.Y. : 2000), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Aquatic models of human ciliary diseases.Genesis (New York, N.Y. : 2000) · 2021
    Review
  10. Tuning CRISPR-Cas9 Gene Drives inG3 (Bethesda, Md.) · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Thomas P ClementsDepartment of BioSciences, Rice University, Houston, Texas.
Bhavna TandonDepartment of BioSciences, Rice University, Houston, Texas.
Hendrik A LintelDepartment of BioSciences, Rice University, Houston, Texas.
Joseph H McCartyDepartment of Neurosurgery, University of Texas M. D. Anderson Cancer Center, Houston, Texas.
Daniel S WagnerDepartment of BioSciences, Rice University, Houston, Texas.ORCID 0000-0002-0595-2436
Rice University · USThe University of Texas MD Anderson Cancer Center · US

Funding

Genetic Models to Study Glial Regulation of AngiogenesisR21NS085688 · NINDS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI MCCARTY, JOSEPH H, WAGNER, DANIEL S · 2014 to 2015
$436k
NINDS NIH HHS R21 NS085688
6 · The paper itself

Abstract

Application of CRISPR-Cas9 technology in diverse organisms has resulted in an explosion of genome modification efforts. To expand the toolbox of applications, we have created an E. coli Exonuclease I (sbcB)-Cas9 fusion that has altered enzymatic activity in zebrafish embryos. This Cas9 variant has increased mutation efficiency and favors longer deletions relative to wild-type Cas9. We anticipate that this variant will allow for more efficient screening for F0 phenotypes and mutation of a larger spectrum of genomic targets including deletion of regulatory regions and creating loss of function mutations in transcription units with poor sequence conservation such as lncRNAs where larger deletions may be required for loss of function.

Indexed as

CRISPR-Cas SystemsAnimalsBacterial ProteinsCRISPR-Associated Protein 9EndonucleasesGene DeletionGene TargetingLoss of Function MutationZebrafishBacterial ProteinsCas9 endonuclease Streptococcus pyogenesCRISPR-Associated Protein 9EndonucleasesDanio rerioS. pyogenes Cas9targeted mutagenesis

Identifiers

PMID28653435
PMCPMC5672551
OpenAlexW2734592589

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.