Evidence map›Paper›PMID 28652867›Full record

ArticleMolecular cytogenetics2017

Scattered genomic amplification in dedifferentiated liposarcoma.

Nils Mandahl, Linda Magnusson, Jenny Nilsson, Björn Viklund, Elsa Arbajian, Fredrik Vult von Steyern, Anders Isaksson, Fredrik Mertens

Open access · goldAbstract read
In one paragraph

Article in Molecular cytogenetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. GLI1 Coamplification in Well-Differentiated/Dedifferentiated Liposarcomas: Clinicopathologic and Molecular Analysis of 92 Cases.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2024
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. TP53 in bone and soft tissue sarcomas.Pharmacology & therapeutics · 2019
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Nils MandahlDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, SE-221 84 Lund, Sweden.
Linda MagnussonDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, SE-221 84 Lund, Sweden.
Jenny NilssonDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, SE-221 84 Lund, Sweden.
Björn ViklundArray and Analysis Facility, Uppsala University, Uppsala, Sweden.
Elsa ArbajianDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, SE-221 84 Lund, Sweden.
Fredrik Vult von SteyernDepartment of Orthopedics, Clinical Sciences, Lund University and Skåne University Hospital, Lund, Sweden.
Anders IsakssonArray and Analysis Facility, Uppsala University, Uppsala, Sweden.
Fredrik MertensDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, SE-221 84 Lund, Sweden.
Lund University · SEUppsala University · SESkåne University Hospital · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAtypical lipomatous tumor (ALT), well differentiated liposarcoma (WDLS) and dedifferentiated liposarcoma (DDLS) are cytogenetically characterized by near-diploid karyotypes with no or few other aberrations than supernumerary ring or giant marker chromosomes, although DDLS tend to have somewhat more complex rearrangements. In contrast, pleomorphic liposarcomas (PLS) have highly aberrant and heterogeneous karyotypes. The ring and giant marker chromosomes contain discontinuous amplicons, in particular including multiple copies of the target genes

resultsThe present study presents a DDLS with an atypical hypertriploid karyotype without any ring or giant marker chromosomes. SNP array analyses revealed amplification of almost the entire 5p and discontinuous amplicons of 12q including the classical target genes, in particular

conclusionsThe observed pattern of scattered amplification does not show the characteristics of chromothripsis, but is novel and differs from the well known cytogenetic manifestations of amplification, i.e., double minutes, homogeneously staining regions and ring chromosomes. Possible explanations for this unusual distribution of amplified sequences might be the mechanism of alternative lengthening of telomeres that is frequently active in DDLS and events associated with telomere crisis.

Indexed as

12q5pAmplificationChromosomesGene expressionLiposarcoma

Identifiers

PMID28652867
PMCPMC5483303
OpenAlexW2715703910

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.