Evidence map›Paper›PMID 28652582›Full record

ArticleScientific reports2017

The Timescale of Emergence and Spread of Turnip Mosaic Potyvirus.

Ryosuke Yasaka, Hirofumi Fukagawa, Mutsumi Ikematsu, Hiroko Soda, Savas Korkmaz, Alireza Golnaraghi, Nikolaos Katis, Simon Y W Ho, Adrian J Gibbs, Kazusato Ohshima

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
14.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
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  4. ScreeningBreeding science · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Genetic diversity and evolutionary analyses of potyviruses infecting narcissus in Iran.Journal of plant pathology : an international journal of the Italian Phytopathological Society · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Resistance to Turnip Mosaic Virus in the FamilyThe plant pathology journal · 2021
    Review
  13. Article
  14. Article
  15. Article
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  17. Article
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 5 countries.

Ryosuke YasakaLaboratory of Plant Virology, Department of Applied Biological Sciences, Faculty of Agriculture, Saga University, 1-banchi, Honjo-machi, Saga, 840-8502, Japan.ORCID 0000-0002-2240-1767
Hirofumi FukagawaLaboratory of Plant Virology, Department of Applied Biological Sciences, Faculty of Agriculture, Saga University, 1-banchi, Honjo-machi, Saga, 840-8502, Japan.
Mutsumi IkematsuLaboratory of Plant Virology, Department of Applied Biological Sciences, Faculty of Agriculture, Saga University, 1-banchi, Honjo-machi, Saga, 840-8502, Japan.
Hiroko SodaLaboratory of Plant Virology, Department of Applied Biological Sciences, Faculty of Agriculture, Saga University, 1-banchi, Honjo-machi, Saga, 840-8502, Japan.
Savas KorkmazDepartment of Plant Protection, Faculty of Agriculture, University of Canakkale Onsekiz Mart, Canakkale, Turkey.
Alireza GolnaraghiDepartment of Plant Protection, College of Agriculture and Natural Resources, Science and Research Branch, Islamic Azad University, Tehran, P.O. Box 14515-775, Iran.
Nikolaos KatisPlant Pathology Laboratory, Faculty of Agriculture, Aristotle University of Thessaloniki, Thessaloniki, 540 06, Greece.
Simon Y W HoSchool of Life and Environmental Sciences, University of Sydney, Sydney, NSW 2006, Australia.ORCID 0000-0002-0361-2307
Adrian J GibbsEmeritus Faculty, Australian National University, Canberra, ACT 2601, Australia.
Kazusato OhshimaLaboratory of Plant Virology, Department of Applied Biological Sciences, Faculty of Agriculture, Saga University, 1-banchi, Honjo-machi, Saga, 840-8502, Japan. ohshimak@cc.saga-u.ac.jp.
Saga University · JPKagoshima University · JPAristotle University of Thessaloniki · GRAustralian National University · AUÇanakkale Onsekiz Mart Üniversitesi · TRIslamic Azad University, Science and Research Branch · IRThe University of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant viruses have important global impacts on crops, and identifying their centre and date of emergence is important for planning control measures. Turnip mosaic virus (TuMV) is a member of the genus Potyvirus in the family Potyviridae and is a major worldwide pathogen of brassica crops. For two decades, we have collected TuMV isolates, mostly from brassicas, in Turkey and neighbouring countries. This region is thought to be the centre of emergence of this virus. We determined the genomic sequences of 179 of these isolates and used these to estimate the timescale of the spread of this virus. Our Bayesian coalescent analyses used synonymous sites from a total of 417 novel and published whole-genome sequences. We conclude that TuMV probably originated from a virus of wild orchids in Germany and, while adapting to wild and domestic brassicas, spread via Southern Europe to Asia Minor no more than 700 years ago. The population of basal-B group TuMVs in Asia Minor is older than all other populations of this virus, including a newly discovered population in Iran. The timescale of the spread of TuMV correlates well with the establishment of agriculture in these countries.

Indexed as

Evolution, MolecularBrassica napusGenome, ViralGenomicsHumansPhylogenyPlant DiseasesPotyvirusRecombination, GeneticTurkeyWhole Genome Sequencing

Identifiers

PMID28652582
PMCPMC5484681
OpenAlexW2685811546

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.