Evidence map›Paper›PMID 28652445›Full record

ArticleIn vivo (Athens, Greece)

Increased Copy Number Variation of mtDNA in an Array-based Digital PCR Assay Predicts Ulcerative Colitis-associated Colorectal Cancer.

Toshiaki Tanaka, Takashi Kobunai, Yoko Yamamoto, Koji Murono, Kensuke Otani, Koji Yasuda, Takeshi Nishikawa, Tomomichi Kiyomatsu, Kazushige Kawai, Keisuke Hata and 3 more

Open access · diamondAbstract read
In one paragraph

Article in In vivo (Athens, Greece). The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Toshiaki TanakaDepartment of Surgical Oncology, the University of Tokyo, Tokyo, Japan toshi-t@venus.dti.ne.jp.
Takashi KobunaiTranslational Research Laboratory, Taiho Pharmaceutical Co., Ltd., Tokyo, Japan.
Yoko YamamotoDepartment of Surgical Oncology, the University of Tokyo, Tokyo, Japan.
Koji MuronoDepartment of Surgical Oncology, the University of Tokyo, Tokyo, Japan.
Kensuke OtaniDepartment of Surgical Oncology, the University of Tokyo, Tokyo, Japan.
Koji YasudaDepartment of Surgical Oncology, the University of Tokyo, Tokyo, Japan.
Takeshi NishikawaDepartment of Surgical Oncology, the University of Tokyo, Tokyo, Japan.
Tomomichi KiyomatsuDepartment of Surgical Oncology, the University of Tokyo, Tokyo, Japan.
Kazushige KawaiDepartment of Surgical Oncology, the University of Tokyo, Tokyo, Japan.
Keisuke HataDepartment of Surgical Oncology, the University of Tokyo, Tokyo, Japan.
Hiroaki NozawaDepartment of Surgical Oncology, the University of Tokyo, Tokyo, Japan.
Soichiro IshiharaDepartment of Surgical Oncology, the University of Tokyo, Tokyo, Japan.
Toshiaki WatanabeDepartment of Surgical Oncology, the University of Tokyo, Tokyo, Japan.
The University of Tokyo · JPTaiho Pharmaceutical (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimMitochondrial dysfunction plays a central role in carcinogenesis in numerous cancer-related diseases. We examined the copy number variation of mitochondrial DNA (mtDNA) and the expression of energy-producing genes in relation to ulcerative colitis (UC)-associated carcinogenesis. MATERIALS AND

methodsWe studied 17 patients with UC-associated adenocarcinoma (UC-Ca) and 16 without UC-associated adenocarcinoma (UC-nonCa). The copy number of mtDNA in non-dysplastic mucosa in both groups was quantified by an array-based digital polymerase chain reaction (PCR) assay. Simultaneously, gene expression related to mitochondrial energy metabolism was determined by a PCR array.

resultsWe observed a higher copy number of mtDNA in non-dysplastic mucosa in the UC-Ca group compared to the UC-nonCa group (484.2 vs. 747.7 copies/cell, p=0.022). The sensitivity, specificity, positive predictive value, and negative predictive value for the detection of UC-associated adenocarcinoma by mtDNA copy number were 43.8%, 100%, 100%, and 60.9%, respectively. We observed an increased expression of mitochondrial genes related to energy metabolism together with an increased copy number of mtDNA.

conclusionMitochondrial function and its metabolic process play essential roles in UC carcinogenesis and are possible risk markers for the development of colitic cancer.

Indexed as

AdenocarcinomaCarcinogenesisColitis, UlcerativeColorectal NeoplasmsDNA Copy Number VariationsDNA, MitochondrialFemaleGastric MucosaGene Expression Regulation, NeoplasticHumansLogistic ModelsMaleDNA, Mitochondrialcarcinogenesisdigital PCRmtDNAUlcerative colitis

Identifiers

PMID28652445
PMCPMC5566928
OpenAlexW2633235921

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.