Evidence map›Paper›PMID 28652195›Full record

ArticleToxicology2017

Predicting drug-induced liver injury: The importance of data curation.

Eleni Kotsampasakou, Floriane Montanari, Gerhard F Ecker

Open access · hybridAbstract readValidation Study
In one paragraph

Article in Toxicology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 88 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review of machine learning and deep learning models for toxicity prediction.Experimental biology and medicine (Maywood, N.J.) · 2023
    Review
  6. Article
  7. Article
  8. Article
  9. Machine Learning Models for Predicting Liver Toxicity.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  10. Article
  11. Computational toxicology (Amsterdam, Netherlands) · 2021
    Article
  12. Article
  13. CombiningChemical research in toxicology · 2021
    Article
  14. Article
  15. The Promise of AI for DILI Prediction.Frontiers in artificial intelligence · 2021
    Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Eleni KotsampasakouUniversity of Vienna, Department of Pharmaceutical Chemistry, Althanstrasse 14, 1090 Vienna, Austria.
Floriane MontanariUniversity of Vienna, Department of Pharmaceutical Chemistry, Althanstrasse 14, 1090 Vienna, Austria.
Gerhard F EckerUniversity of Vienna, Department of Pharmaceutical Chemistry, Althanstrasse 14, 1090 Vienna, Austria. Electronic address: gerhard.f.ecker@univie.ac.at.
University of Vienna · AT

Funding

Austrian Science Fund FWF F 3502
6 · The paper itself

Abstract

Drug-induced liver injury (DILI) is a major issue for both patients and pharmaceutical industry due to insufficient means of prevention/prediction. In the current work we present a 2-class classification model for DILI, generated with Random Forest and 2D molecular descriptors on a dataset of 966 compounds. In addition, predicted transporter inhibition profiles were also included into the models. The initially compiled dataset of 1773 compounds was reduced via a 2-step approach to 966 compounds, resulting in a significant increase (p-value<0.05) in model performance. The models have been validated via 10-fold cross-validation and against three external test sets of 921, 341 and 96 compounds, respectively. The final model showed an accuracy of 64% (AUC 68%) for 10-fold cross-validation (average of 50 iterations) and comparable values for two test sets (AUC 59%, 71% and 66%, respectively). In the study we also examined whether the predictions of our in-house transporter inhibition models for BSEP, BCRP, P-glycoprotein, and OATP1B1 and 1B3 contributed in improvement of the DILI mode. Finally, the model was implemented with open-source 2D RDKit descriptors in order to be provided to the community as a Python script.

Indexed as

Computer SimulationData CurationModels, StatisticalAlgorithmsAnimalsArea Under CurveChemical and Drug Induced Liver InjuryDatabases, FactualData MiningHumansLiverMembrane Transport ProteinsReproducibility of ResultsRisk AssessmentToxicity TestsMembrane Transport Proteins2-class classificationData curationDrug-induced liver injuryLiver transportersRandom ForestToxicity reports

Identifiers

PMID28652195
PMCPMC6422282
OpenAlexW2722094464

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.