Evidence map›Paper›PMID 28651680›Full record

ArticleEpidemiology and infection2017

Full-genome sequence analysis of an uncommon norovirus genotype, GII.21, from South Korea.

J W Lee, S G Lee, H G Cho, Y J Park, J W Yun, C J Park, S Y Paik

Open access · bronzeAbstract read
In one paragraph

Article in Epidemiology and infection, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

J W LeeDepartment of Microbiology,College of Medicine,The Catholic University of Korea,Seoul,Republic of Korea.
S G LeeKorea Zoonosis Research Institute,Chonbuk National University,Iksan,Republic of Korea.
H G ChoDivision of Public Health Research,Gyeonggi Province Institute of Health and Environment,Suwon,Republic of Korea.
Y J ParkDepartment of Laboratory Medicine,College of Medicine,The Catholic University of Korea,Seoul,Republic of Korea.
J W YunDepartment of Dermatology,Bucheon St. Mary's Hospital,College of Medicine,The Catholic University of Korea,Seoul,Republic of Korea.
C J ParkDepartment of Dermatology,Bucheon St. Mary's Hospital,College of Medicine,The Catholic University of Korea,Seoul,Republic of Korea.
S Y PaikDepartment of Microbiology,College of Medicine,The Catholic University of Korea,Seoul,Republic of Korea.
Catholic University of Korea · KRGyeonggi Research Institute · KRJeonbuk National University · KRThe Catholic University of Korea Bucheon St. Mary's Hospital · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Noroviruses (NoVs) are major causal agents of acute gastroenteritis in humans. NoV GII.4 is the predominant genotype globally. However, uncommon and minor types of NoVs are consistently detected and some have been shown to dominate over GII.4. Therefore, the prevalence of dominant and uncommon NoVs makes the identification of these viruses important for the prediction and prevention of pandemics. In this study, the full-genome sequence of a NoV (strain JW) detected in Korea was extensively characterized. The full-length genome was 7510 nucleotides long, and phylogenetic analysis based on the whole-genome sequences, including open reading frame (ORF)1, ORF2, and ORF3, indicated that it belonged to the GII.21 genotype. Strain JW showed maximum identity with strain YO284; however, comparison of the amino acid sequence of ORF2, which functions as an antigen, showed substitutions in several amino acids. GII.21 is not a prevalent epidemiological agent of acute gastroenteritis in humans, but it is consistently found in gastroenteritis patients from several countries. The present study provides the first full-genome sequence analysis of NoV GII.21 isolated from a patient in Korea. Our findings provide not only valuable genome information but also data for epidemiology studies, epidemic prevention, and vaccine development strategies.

Indexed as

Genome, ViralGenotypeAmino Acid SequenceCaliciviridae InfectionsGastroenteritisNorovirusPhylogenyPrevalenceRepublic of KoreaSequence AlignmentViral ProteinsViral ProteinsGII.21NorovirusNoVsequence analysisuncommon NoV

Identifiers

PMID28651680
PMCPMC9148854
OpenAlexW2733786825

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.