Evidence map›Paper›PMID 28650214›Full record

ArticleEpigenetics2017

Distinct DNA methylation profiles in bone and blood of osteoporotic and healthy postmenopausal women.

Sjur Reppe, Tonje G Lien, Yi-Hsiang Hsu, Vigdis T Gautvik, Ole K Olstad, Rona Yu, Hege G Bakke, Robert Lyle, Marianne K Kringen, Ingrid K Glad and 1 more

Registry-linked trialAbstract read
In one paragraph

Article in Epigenetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06509776 (Early Life Determinants of Skeletal Maturation and Endocrine Health in Young Adults - A Nationwide Birth Cohort Study), which is not on this map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06509776 enrolling by invitationnot on this mapstarted 2024, after this paper: background citation

Early Life Determinants of Skeletal Maturation and Endocrine Health in Young Adults - A Nationwide Birth Cohort Study

TypeobservationalSponsorHolbaek SygehusRan2024 to 2031Enrolled2,000ConditionsOsteoporosis, Sarcopenia, Obesity, Cardiovascular Diseases
3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Review
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  3. Article
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  9. Article
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  14. Molecular and Cellular Mechanisms of Osteoporosis.International journal of molecular sciences · 2023
    Review
  15. Article
  16. Mechanical-Stress-Related Epigenetic Regulation ofInternational journal of molecular sciences · 2022
    Article
  17. Review
  18. Article
  19. Article
  20. Recent advances in the epigenetics of bone metabolism.Journal of bone and mineral metabolism · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Sjur Reppea Department of Medical Biochemistry , Oslo University Hospital , Oslo , Norway.
Tonje G Liend Department of Mathematics , University of Oslo , Oslo , Norway.
Yi-Hsiang Hsue Hebrew SeniorLife Institute for Aging Research and Harvard Medical School , Boston , MA , USA.
Vigdis T Gautvikc University of Oslo, Institute of Basic Medical Sciences , Oslo , Norway.
Ole K Olstada Department of Medical Biochemistry , Oslo University Hospital , Oslo , Norway.
Rona Yue Hebrew SeniorLife Institute for Aging Research and Harvard Medical School , Boston , MA , USA.
Hege G Bakkei Center for Psychopharmacology, Diakonhjemmet Hospital , Oslo , Norway.
Robert Lylej Department of Medical Genetics , Oslo University Hospital , Oslo , Norway.
Marianne K Kringeni Center for Psychopharmacology, Diakonhjemmet Hospital , Oslo , Norway.
Ingrid K Gladd Department of Mathematics , University of Oslo , Oslo , Norway.
Kaare M Gautvikb Lovisenberg Diakonale Hospital, Unger-Vetlesen Institute , Oslo , Norway.

Funding

Identifying Osteoporosis Genes by Whole Genome Sequencing and Functional Validation in Zebra FishR01AR072199 · NIAMS · HEBREW REHABILITATION CENTER FOR AGED · PI HSU, YI-HSIANG · 2017 to 2022
$3.2M
Osteocalcin and Metabolic Risk Factors. The Framingham StudyR21AR056405 · NIAMS · HEBREW REHABILITATION CENTER FOR AGED · PI HSU, YI-HSIANG · 2010 to 2011
$377k
NIAMS NIH HHS R01 AR072199NIAMS NIH HHS R21 AR056405
6 · The paper itself

Abstract

DNA methylation affects expression of associated genes and may contribute to the missing genetic effects from genome-wide association studies of osteoporosis. To improve insight into the mechanisms of postmenopausal osteoporosis, we combined transcript profiling with DNA methylation analyses in bone. RNA and DNA were isolated from 84 bone biopsies of postmenopausal donors varying markedly in bone mineral density (BMD). In all, 2529 CpGs in the top 100 genes most significantly associated with BMD were analyzed. The methylation levels at 63 CpGs differed significantly between healthy and osteoporotic women at 10% false discovery rate (FDR). Five of these CpGs at 5% FDR could explain 14% of BMD variation. To test whether blood DNA methylation reflect the situation in bone (as shown for other tissues), an independent cohort was selected and BMD association was demonstrated in blood for 13 of the 63 CpGs. Four transcripts representing inhibitors of bone metabolism-MEPE, SOST, WIF1, and DKK1-showed correlation to a high number of methylated CpGs, at 5% FDR. Our results link DNA methylation to the genetic influence modifying the skeleton, and the data suggest a complex interaction between CpG methylation and gene regulation. This is the first study in the hitherto largest number of postmenopausal women to demonstrate a strong association among bone CpG methylation, transcript levels, and BMD/fracture. This new insight may have implications for evaluation of osteoporosis stage and susceptibility.

Indexed as

DNA MethylationAdaptor Proteins, Signal TransducingAgedAged, 80 and overBlood CellsBone and BonesBone DensityBone Morphogenetic ProteinsCase-Control StudiesCpG IslandsExtracellular Matrix ProteinsFemaleGenetic MarkersGlycoproteinsHumansIntercellular Signaling Peptides and ProteinsAdaptor Proteins, Signal TransducingBone Morphogenetic ProteinsDKK1 protein, humanExtracellular Matrix ProteinsGenetic MarkersGlycoproteinsIntercellular Signaling Peptides and ProteinsMEPE protein, humanPhosphoproteinsRepressor ProteinsSOST protein, humanWIF1 protein, human

Identifiers

PMID28650214
PMCPMC5687328

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.