Evidence map›Paper›PMID 28649985›Full record

ArticleNature communications2017

Attenuation of RNA polymerase II pausing mitigates BRCA1-associated R-loop accumulation and tumorigenesis.

Xiaowen Zhang, Huai-Chin Chiang, Yao Wang, Chi Zhang, Sabrina Smith, Xiayan Zhao, Sreejith J Nair, Joel Michalek, Ismail Jatoi, Meeghan Lautner and 20 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 121 papers.

0numbers the graph read from it
0cells of the map it votes in
121citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

121 citing papers in PubMed, 157 citations in OpenAlex.

  1. Article
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  4. Review
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  9. Article
  10. Review
  11. Article
  12. R-loops: a key driver of inflammatory responses in cancer.Experimental & molecular medicine · 2025
    Review
  13. Review
  14. Article
  15. Review
  16. Review
  17. AAV-mediated genome editing is influenced by the formation of R-loops.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  18. Article
  19. Article
  20. Article

61 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors at 8 institutions in 2 countries.

Xiaowen ZhangDepartment of Molecular Medicine, University of Texas Health Science Center at San Antonio, 8403 Floyd Curl Drive, San Antonio, Texas 78229, USA.
Huai-Chin ChiangDepartment of Molecular Medicine, University of Texas Health Science Center at San Antonio, 8403 Floyd Curl Drive, San Antonio, Texas 78229, USA.
Yao WangDepartment of Molecular Medicine, University of Texas Health Science Center at San Antonio, 8403 Floyd Curl Drive, San Antonio, Texas 78229, USA.
Chi ZhangDepartment of Molecular Medicine, University of Texas Health Science Center at San Antonio, 8403 Floyd Curl Drive, San Antonio, Texas 78229, USA.
Sabrina SmithDepartment of Molecular Medicine, University of Texas Health Science Center at San Antonio, 8403 Floyd Curl Drive, San Antonio, Texas 78229, USA.
Xiayan ZhaoDepartment of Molecular Medicine, University of Texas Health Science Center at San Antonio, 8403 Floyd Curl Drive, San Antonio, Texas 78229, USA.
Sreejith J NairDepartment of Molecular Medicine, University of Texas Health Science Center at San Antonio, 8403 Floyd Curl Drive, San Antonio, Texas 78229, USA.
Joel MichalekDepartment of Epidemiology and Biostatistics, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Ismail JatoiDepartment of Surgery, Cancer Therapy and Research Center, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Meeghan LautnerDepartment of Surgery, Cancer Therapy and Research Center, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Boyce OliverDepartment of Surgery, Cancer Therapy and Research Center, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Howard WangDepartment of Surgery, Cancer Therapy and Research Center, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Anna PetitDepartment of Pathology, University Hospital of Bellvitge, Bellvitge Institute for Biomedical Research (IDIBELL), L'Hospitalet del Llobregat, Barcelona 08908, Spain.
Teresa SolerDepartment of Pathology, University Hospital of Bellvitge, Bellvitge Institute for Biomedical Research (IDIBELL), L'Hospitalet del Llobregat, Barcelona 08908, Spain.
Joan BrunetHereditary Cancer Program, Catalan Institute of Oncology (ICO), Girona Biomedical Research Institute (IDIBGI), Girona 17007, Spain.ORCID 0000-0003-1945-3512
Francesca MateoBreast Cancer and Systems Biology Lab, Program Against Cancer Therapeutic Resistance (ProCURE), Catalan Institute of Oncology (ICO), Bellvitge Institute for Biomedical Research (IDIBELL), L'Hospitalet del Llobregat, Barcelona 08908, Spain.
Miguel Angel PujanaBreast Cancer and Systems Biology Lab, Program Against Cancer Therapeutic Resistance (ProCURE), Catalan Institute of Oncology (ICO), Bellvitge Institute for Biomedical Research (IDIBELL), L'Hospitalet del Llobregat, Barcelona 08908, Spain.
Elizabeth PoggiLombardi Comprehensive Cancer Center, Georgetown University, Washington, District of Columbia 20007, USA.
Krysta ChaldekasLombardi Comprehensive Cancer Center, Georgetown University, Washington, District of Columbia 20007, USA.
Claudine IsaacsLombardi Comprehensive Cancer Center, Georgetown University, Washington, District of Columbia 20007, USA.
Beth N PeshkinLombardi Comprehensive Cancer Center, Georgetown University, Washington, District of Columbia 20007, USA.
Oscar OchoaPRMA Plastic Surgery, San Antonio, Texas 78240, USA.
Frederic ChedinDepartment of Molecular and Cellular Biology, University of California, Davis, California 95616, USA.
Constantine TheoharisSouth Texas Pathology Associates, San Antonio, Texas 78229, USA.
Lu-Zhe SunDepartment of Cell Systems and Anatomy, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Tyler J CurielDepartment of Medicine, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Richard ElledgeDepartment of Medicine, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Victor X JinDepartment of Molecular Medicine, University of Texas Health Science Center at San Antonio, 8403 Floyd Curl Drive, San Antonio, Texas 78229, USA.
Yanfen HuDepartment of Molecular Medicine, University of Texas Health Science Center at San Antonio, 8403 Floyd Curl Drive, San Antonio, Texas 78229, USA.
Rong LiDepartment of Molecular Medicine, University of Texas Health Science Center at San Antonio, 8403 Floyd Curl Drive, San Antonio, Texas 78229, USA.
The University of Texas Health Science Center at San Antonio · USGeorgetown University · USBellvitge University Hospital · ESInstitut d'Investigació Biomédica de Bellvitge · ESCatalan Institute for Water Research · ESMedical Center Ophthalmology Associates · USTexas Plastic Surgery · USUniversity of California, Davis · US

Funding

TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Lei Zheng · 1991 to 2026
$59.1M
Cancer Biology Training ProgramT32CA148724 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Pei Wang, Feng-Chun Yang · 2011 to 2026
$3.3M
Omics analysis of three-dimensional transcriptional regulationR01GM114142 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI JIN, VICTOR, LIN, SHILI · 2015 to 2024
$2.7M
Crosstalk between BRCA1 and Transcription in Breast CancerR01CA220578 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LI, RONG · 2017 to 2022
$2.1M
Effect of bisphenol A exposure on mammary stem cell function and transformationR01ES022057 · NIEHS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI SUN, LUZHE · 2012 to 2016
$1.7M
B7-H1 Signaling in Ovarian CancerR01CA164122 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI CURIEL, TYLER J. · 2012 to 2016
$1.5M
Regulation of hormone production by matrix proteinsR01CA161349 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LI, RONG · 2012 to 2016
$1.5M
NCI NIH HHS P30 CA054174NCI NIH HHS R01 CA161349NCI NIH HHS R01 CA164122NCI NIH HHS R01 CA220578NCI NIH HHS T32 CA148724NIEHS NIH HHS R01 ES022057NIGMS NIH HHS R01 GM114142
6 · The paper itself

Abstract

Most BRCA1-associated breast tumours are basal-like yet originate from luminal progenitors. BRCA1 is best known for its functions in double-strand break repair and resolution of DNA replication stress. However, it is unclear whether loss of these ubiquitously important functions fully explains the cell lineage-specific tumorigenesis. In vitro studies implicate BRCA1 in elimination of R-loops, DNA-RNA hybrid structures involved in transcription and genetic instability. Here we show that R-loops accumulate preferentially in breast luminal epithelial cells, not in basal epithelial or stromal cells, of BRCA1 mutation carriers. Furthermore, R-loops are enriched at the 5' end of those genes with promoter-proximal RNA polymerase II (Pol II) pausing. Genetic ablation of Cobra1, which encodes a Pol II-pausing and BRCA1-binding protein, ameliorates R-loop accumulation and reduces tumorigenesis in Brca1-knockout mouse mammary epithelium. Our studies show that Pol II pausing is an important contributor to BRCA1-associated R-loop accumulation and breast cancer development.

Indexed as

AnimalsBRCA1 ProteinBreastBreast NeoplasmsCarcinogenesisFemaleHumansMiceMice, KnockoutNuclear ProteinsNucleic Acid ConformationPromoter Regions, GeneticRNA-Binding ProteinsRNA Polymerase IITumor Suppressor ProteinsBRCA1 ProteinBRCA1 protein, humanBrca1 protein, mouseCobra1 protein, mouseNuclear ProteinsRNA-Binding ProteinsRNA Polymerase IITumor Suppressor Proteins

Identifiers

PMID28649985
PMCPMC5490191
OpenAlexW2715937868

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.