Evidence map›Paper›PMID 28649977›Full record

ArticlePhysical biology2017

Convection shapes the trade-off between antibiotic efficacy and the selection for resistance in spatial gradients.

Matti Gralka, Diana Fusco, Stephen Martis, Oskar Hallatschek

Abstract read
In one paragraph

Article in Physical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Hydrodynamic flow and concentration gradients in the gut enhance neutral bacterial diversity.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Article
  7. Emergent robustness of bacterial quorum sensing in fluid flow.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Matti GralkaDepartment of Physics, University of California, Berkeley, CA 94720, United States of America.ORCID 0000-0003-4599-1859
Diana FuscoDepartment of Physics, University of California, Berkeley, CA 94720, United States of America.
Stephen MartisDepartment of Physics, University of California, Berkeley, CA 94720, United States of America.
Oskar HallatschekDepartment of Physics, University of California, Berkeley, CA 94720, United States of America.

Funding

Resolving the Mechano-Chemical Regulation of Microbial Populations in Microfluidic DevicesR01GM115851 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HALLATSCHEK, OSKAR · 2015 to 2023
$2.2M
NIGMS NIH HHS R01 GM115851
6 · The paper itself

Abstract

Since penicillin was discovered about 90 years ago, we have become used to using drugs to eradicate unwanted pathogenic cells. However, using drugs to kill bacteria, viruses or cancer cells has the serious side effect of selecting for mutant types that survive the drug attack. A crucial question therefore is how one could eradicate as many cells as possible for a given acceptable risk of drug resistance evolution. We address this general question in a model of drug resistance evolution in spatial drug gradients, which recent experiments and theories have suggested as key drivers of drug resistance. Importantly, our model takes into account the influence of convection, resulting for instance from blood flow. Using stochastic simulations, we study the fates of individual resistance mutations and quantify the trade-off between the killing of wild-type cells and the rise of resistance mutations: shallow gradients and convection into the antibiotic region promote wild-type death, at the cost of increasing the establishment probability of resistance mutations. We can explain these observed trends by modeling the adaptation process as a branching random walk. Our analysis reveals that the trade-off between death and adaptation depends on the relative length scales of the spatial drug gradient and random dispersal, and the strength of convection. Our results show that convection can have a momentous effect on the rate of establishment of new mutations, and may heavily impact the efficiency of antibiotic treatment.

Indexed as

Drug Resistance, BacterialModels, BiologicalSelection, GeneticAnti-Bacterial AgentsBacteriaConvectionMutationStochastic ProcessesAnti-Bacterial Agents

Identifiers

PMID28649977
PMCPMC5728155

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.