Evidence map›Paper›PMID 28649782›Full record

ArticleHuman mutation2017

Heterozygous variants in ACTL6A, encoding a component of the BAF complex, are associated with intellectual disability.

Ronit Marom, Mahim Jain, Lindsay C Burrage, I-Wen Song, Brett H Graham, Chester W Brown, Servi J C Stevens, Alexander P A Stegmann, Andrew T Gunter, Julie D Kaplan and 14 more

Abstract read
In one paragraph

Article in Human mutation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
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  5. Review
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  11. Reprogramming of the epigenome in neurodevelopmental disorders.Critical reviews in biochemistry and molecular biology · 2022
    Review
  12. Article
  13. Case Report: BAF-Opathies/SSRIDDs Due to aFrontiers in cardiovascular medicine · 2021
    Article
  14. Loss of the neural-specific BAF subunit ACTL6B relieves repression of early response genes and causes recessive autism.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 11 institutions in 3 countries.

Ronit MaromDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Mahim JainDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Lindsay C BurrageDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
I-Wen SongDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Brett H GrahamDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Chester W BrownDepartment of Pediatrics/Genetics Division, University of Tennessee Health Science Center Memphis, Memphis, Tennessee.
Servi J C StevensDepartment of Human Genetics, Maastricht University Hospital, Maastricht, The Netherlands.
Alexander P A StegmannDepartment of Human Genetics, Maastricht University Hospital, Maastricht, The Netherlands.
Andrew T GunterDepartment of Pediatrics, Division of Medical Genetics, University of Mississippi Medical Center, Jackson, Mississippi.
Julie D KaplanDepartment of Pediatrics, Division of Medical Genetics, University of Mississippi Medical Center, Jackson, Mississippi.
Ralitza H GavrilovaDepartment of Medical Genetics, Mayo Clinic, Rochester, Minnesota.
Marwan ShinawiDepartment of Pediatrics, Division of Genetics and Genomic Medicine, Washington University School of Medicine, St. Louis, Missouri.
Jill A RosenfeldDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Yangjin BaeDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Alyssa A TranDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Yuqing ChenDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
James T LuHelix, San Carlos, California.
Richard A GibbsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Christine EngDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Yaping YangDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Justine RousseauDepartment of Pediatrics, CHU Ste-Justine and University of Montreal, Montreal, Canada.
Bert B A de VriesDepartment of Human Genetics and Donders Centre for Neuroscience, Radboud University Medical Center, Nijmegen, The Netherlands.
Philippe M CampeauDepartment of Pediatrics, CHU Ste-Justine and University of Montreal, Montreal, Canada.
Brendan LeeDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Baylor College of Medicine · USMaastricht University · NLUniversity of Mississippi Medical Center · USBaylor Genetics · USCentre Hospitalier Universitaire Sainte-Justine · CAHelix (United States) · USMayo Clinic · USRadboud University Medical Center · NLUniversité de Montréal · CAUniversity of Tennessee Health Science Center · USWashington University in St. Louis · US

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DAVID R ROWLEY · 2007 to 2026
$73.9M
UNDERSTANDING FXTAS AMONG MALES WITH THE FMR1 PREMUTATIONP30HD024064 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI TOLIAS, KIMBERLY R · 1988 to 2013
$29.4M
Virology CoreP30AI036211 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI BUTEL, JANET S · 1994 to 2015
$21.7M
Baylor-Johns Hopkins Center for Mendelian GeneticsU54HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2012 to 2015
$15.6M
Project 3: Collagen post-translational modification and cross-linking in OIP01HD070394 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI LEE, BRENDAN · 2011 to 2020
$13.4M
MEDICAL GENETICS RESEARCH FELLOWSHIP PROGRAMT32GM007526 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI Brendan Lee · 1985 to 2026
$11.4M
Disordered Energy Metabolism in Argininosuccinate Lyase DeficiencyK08DK106453 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI BURRAGE, LINDSAY C · 2015 to 2018
$622k
BD Biosciences Special Order LSRIIS10RR024574 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI LUMPKIN, ELLEN A · 2009 to 2009
$430k
NCI NIH HHS P30 CA125123NCRR NIH HHS S10 RR024574NHGRI NIH HHS U54 HG003273NHGRI NIH HHS U54 HG006542NIAID NIH HHS P30 AI036211NICHD NIH HHS P01 HD070394NICHD NIH HHS P30 HD024064NIDDK NIH HHS K08 DK106453NIGMS NIH HHS T32 GM007526
6 · The paper itself

Abstract

Pathogenic variants in genes encoding components of the BRG1-associated factor (BAF) chromatin remodeling complex have been associated with intellectual disability syndromes. We identified heterozygous, novel variants in ACTL6A, a gene encoding a component of the BAF complex, in three subjects with varying degrees of intellectual disability. Two subjects have missense variants affecting highly conserved amino acid residues within the actin-like domain. Missense mutations in the homologous region in yeast actin were previously reported to be dominant lethal and were associated with impaired binding of the human ACTL6A to β-actin and BRG1. A third subject has a splicing variant that creates an in-frame deletion. Our findings suggest that the variants identified in our subjects may have a deleterious effect on the function of the protein by disturbing the integrity of the BAF complex. Thus, ACTL6A gene mutation analysis should be considered in patients with intellectual disability, learning disabilities, or developmental language disorder.

Indexed as

ActinsAdolescentChildChromatin Assembly and DisassemblyChromosomal Proteins, Non-HistoneDNA-Binding ProteinsDNA HelicasesExomeFaceFemaleHand Deformities, CongenitalHeterozygoteHumansIntellectual DisabilityMaleMicrognathismActinsACTL6A protein, humanBANF1 protein, humanChromosomal Proteins, Non-HistoneDNA-Binding ProteinsDNA HelicasesMultiprotein ComplexesNuclear ProteinsSMARCA4 protein, humanTranscription FactorsACTL6ABAF complexintellectual disabilityspeech delay

Identifiers

PMID28649782
PMCPMC5599325
OpenAlexW2682847713

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.