Evidence map›Paper›PMID 28649705›Full record

ArticleJournal of clinical laboratory analysis2018

NaOH-HCl neutralized urine preparation for direct testing of uropathogens by Bruker MS.

Ji Seon Choi, Jayoung Kim, Han-Soo Kim, Chang-Wan Kwon, Min-Sung Kim, Seong-Hyeok Choi

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Article in Journal of clinical laboratory analysis, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

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2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Ji Seon ChoiDepartment of Laboratory Medicine, International St. Mary's Hospital, Catholic Kwandong University, Incheon, Korea.
Jayoung KimDepartment of Laboratory Medicine, International St. Mary's Hospital, Catholic Kwandong University, Incheon, Korea.ORCID http://orcid.org/0000-0003-2977-1813
Han-Soo KimDepartment of Biomedical Sciences, Catholic Kwandong University, Gangneung, Korea.
Chang-Wan KwonDepartment of Laboratory Medicine, International St. Mary's Hospital, Catholic Kwandong University, Incheon, Korea.
Min-Sung KimDepartment of Laboratory Medicine, International St. Mary's Hospital, Catholic Kwandong University, Incheon, Korea.
Seong-Hyeok ChoiDepartment of Laboratory Medicine, International St. Mary's Hospital, Catholic Kwandong University, Incheon, Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWe evaluated the analytical performance of a NaOH-HCl neutralization protocol for identifying uropathogens directly from urine samples by a Bruker MS system (Bruker Daltonics, German) and sought to establish a protocol for integrating the method with conventional screening.

methodsAmong all urine samples requested for Gram staining, UF-1000i, and urine cultures by physicians, we selected samples that were positive by both Gram staining and UF-1000i testing. Urine was prepared by neutralization using 0.01M NaOH-HCl, and the samples were processed by Bruker MS. For the low detection limit, one strain each of Escherichia coli and Enterococcus faecium was inoculated in sterile deionized water and sterile urine specimens at sequential dilutions.

resultsIn a total of 1270 urine samples, 125 samples (9.8%) were positive by both Gram staining and UF-1000i. Of 94 samples showing a single morphotype on agar plates, 82 samples had colony counts ≥10

conclusionsBruker MS with urine preparation by NaOH-HCl neutralization provides a simple, cost-effective, and accurate method for identifying uropathogens directly from urine. Using Bruker MS when single morphotype Gram staining and the UF-1000i count as ≥10

Indexed as

BacteriaColony Count, MicrobialHumansHydrochloric AcidLimit of DetectionMolecular TypingSodium HydroxideSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationUrinalysisUrinary Tract InfectionsHydrochloric AcidSodium HydroxideBruker MSdirect identificationNaOH-HCl neutralizationurine screening tests

Identifiers

PMID28649705
PMCPMC6816833

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.