Evidence map›Paper›PMID 28649357›Full record

ArticleEcology and evolution2017

RNA editing by the host ADAR system affects the molecular evolution of the Zika virus.

Helen Piontkivska, Madeline Frederick, Michael M Miyamoto, Marta L Wayne

Open access · goldAbstract read
In one paragraph

Article in Ecology and evolution, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Explaining Pathogenicity of Congenital Zika and Guillain-Barré Syndromes: Does Dysregulation of RNA Editing Play a Role?BioEssays : news and reviews in molecular, cellular and developmental biology · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Helen PiontkivskaDepartment of Biological Sciences and School of Biomedical Sciences Kent State University Kent OH USA.ORCID 0000-0003-1844-864X
Madeline FrederickDepartment of Biological Sciences and School of Biomedical Sciences Kent State University Kent OH USA.
Michael M MiyamotoDepartment of Biology University of Florida Gainesville FL USA.
Marta L WayneDepartment of Biology University of Florida Gainesville FL USA.
Kent State University · USUniversity of Florida · US

Funding

Sigma virus in Drosophila: a model system for the evolution of virulenceR01GM083192 · NIGMS · UNIVERSITY OF FLORIDA · PI WAYNE, MARTA L · 2009 to 2012
$1.2M
Rapid Induction of apoptosis against viral infectionR01GM106174 · NIGMS · UNIVERSITY OF FLORIDA · PI ZHOU, LEI · 2014 to 2017
$1.1M
NIGMS NIH HHS R01 GM083192NIGMS NIH HHS R01 GM106174
6 · The paper itself

Abstract

Zika virus (ZIKV) is a mosquito-transmitted flavivirus, linked to microcephaly and fetal death in humans. Here, we investigate whether host-mediated RNA editing of adenosines (ADAR) plays a role in the molecular evolution of ZIKV. Using complete coding sequences for the ZIKV polyprotein, we show that potential ADAR substitutions are underrepresented at the ADAR-resistant GA dinucleotides of both the positive and negative strands, that these changes are spatially and temporally clustered (as expected of ADAR editing) for three branches of the viral phylogeny, and that ADAR mutagenesis can be linked to its codon usage. Furthermore, resistant GA dinucleotides are enriched on the positive (but not negative) strand, indicating that the former is under stronger purifying selection than the latter. ADAR editing also affects the evolution of the rhabdovirus sigma. Our study now documents that host ADAR editing is a mutation and evolutionary force of positive- as well as negative-strand RNA viruses.

Indexed as

ADARmolecular evolutionRNA editingRNA virusZika virus

Identifiers

PMID28649357
PMCPMC5478085
OpenAlexW2614845453

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.