Evidence map›Paper›PMID 28648898›Full record

ArticleStem cell reports2017

Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.

Bo Yu, Xiao Dong, Silvia Gravina, Önder Kartal, Timothy Schimmel, Jacques Cohen, Drew Tortoriello, Raifa Zody, R David Hawkins, Jan Vijg

Abstract read
In one paragraph

Article in Stem cell reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
  2. Germline hypomethylation shapes dynamic CpG reservoirs in ape genomes.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. A naturally occurring variant ofGenome research · 2023
    Article
  11. Article
  12. Advances in Oocyte Maturation In Vivo and In Vitro in Mammals.International journal of molecular sciences · 2023
    Review
  13. Article
  14. Computational Methods for Single-cell DNA Methylome Analysis.Genomics, proteomics & bioinformatics · 2023
    Review
  15. Beyond Genes: Germline Disruption in the Etiology of Autism Spectrum Disorders.Journal of autism and developmental disorders · 2022
    Article
  16. Epigenetics, DNA damage, and aging.The Journal of clinical investigation · 2022
    Review
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Bo YuDepartment of OBGYN, University of Washington School of Medicine, 1959 North East Pacific Street, Box 356460, Seattle, WA 98195-6460, USA. Electronic address: by26@uw.edu.
Xiao DongDepartment of Genetics, Albert Einstein College of Medicine, 1301 Morris Park Avenue, Price 468, Bronx, New York, NY 10461, USA.
Silvia GravinaDepartment of Genetics, Albert Einstein College of Medicine, 1301 Morris Park Avenue, Price 468, Bronx, New York, NY 10461, USA.
Önder KartalInstitute of Plant Biology, University of Zurich, 8008 Zurich, Switzerland.
Timothy SchimmelReprogenetics LLC, Livingston, NJ 07039, USA.
Jacques CohenReprogenetics LLC, Livingston, NJ 07039, USA.
Drew TortorielloSher Institutes for Reproductive Medicine, New York, NY 10016, USA.
Raifa ZodySher Institutes for Reproductive Medicine, New York, NY 10016, USA.
R David HawkinsDepartments of Medicine and Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA.
Jan VijgDepartment of Genetics, Albert Einstein College of Medicine, 1301 Morris Park Avenue, Price 468, Bronx, New York, NY 10461, USA. Electronic address: jan.vijg@einstein.yu.edu.

Funding

THE IMPACT OF CELLULAR DEFENSE ON THE ROLE OF Ku80 IN GENOME MAINTENANCE AND LONGP01AG017242 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI VIJG, JAN · 1999 to 2023
$46.1M
REPRODUCTIVE SCIENTIST TRAINING PROGRAMK12HD000849 · NICHD · WASHINGTON UNIVERSITY · PI Danny J Schust · 1988 to 2026
$33.2M
Functional assessment of distal regulatory SNPs associated with type 1 diabetes.R01DK103667 · NIDDK · UNIVERSITY OF WASHINGTON · PI HAWKINS, RAYMOND DAVID · 2015 to 2019
$2.5M
The role of fallopian tube microbiome in ovarian carcinogenesisK08CA222385 · NCI · UNIVERSITY OF WASHINGTON · PI YU, BO · 2018 to 2023
$1.1M
NCI NIH HHS K08 CA222385NIA NIH HHS P01 AG017242NICHD NIH HHS K12 HD000849NICHD NIH HHS L50 HD080663NIDDK NIH HHS R01 DK103667
6 · The paper itself

Abstract

The establishment of DNA methylation patterns in oocytes is a highly dynamic process marking gene-regulatory events during fertilization, embryonic development, and adulthood. However, after epigenetic reprogramming in primordial germ cells, how and when DNA methylation is re-established in developing human oocytes remains to be characterized. Here, using single-cell whole-genome bisulfite sequencing, we describe DNA methylation patterns in three different maturation stages of human oocytes. We found that while broad-scale patterns of CpG methylation have been largely established by the immature germinal vesicle stage, localized changes continue into later development. Non-CpG methylation, on the other hand, undergoes a large-scale, generalized remodeling through the final stage of maturation, with the net overall result being the accumulation of methylation as oocytes mature. The role of the genome-wide, non-CpG methylation remodeling in the final stage of oocyte maturation deserves further investigation.

Indexed as

CpG IslandsDNA MethylationOogenesisAdultCells, CulturedEpigenesis, GeneticFemaleGene Expression Regulation, DevelopmentalGenome, HumanHumansOocytesSingle-Cell AnalysisDNA methylomeepigenomehuman oocytein vitro maturationnon-CpG methylationoocyte maturationsingle cell

Identifiers

PMID28648898
PMCPMC5511109

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.