Evidence map›Paper›PMID 28647755›Full record

ArticleMicrobial ecology2018

Namib Desert Soil Microbial Community Diversity, Assembly, and Function Along a Natural Xeric Gradient.

Vincent Scola, Jean-Baptiste Ramond, Aline Frossard, Olivier Zablocki, Evelien M Adriaenssens, Riegardt M Johnson, Mary Seely, Don A Cowan

Abstract read
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In one paragraph

Article in Microbial ecology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
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  3. The prevalence and distribution ofFrontiers in microbiomes · 2026
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  18. Article
  19. Microbial Biogeochemical Cycling of Nitrogen in Arid Ecosystems.Microbiology and molecular biology reviews : MMBR · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Vincent ScolaCentre for Microbial Ecology and Genomics (CMEG), Department of Microbiology, University of Pretoria, Pretoria, South Africa.
Jean-Baptiste RamondCentre for Microbial Ecology and Genomics (CMEG), Department of Genetics, University of Pretoria, Pretoria, South Africa.ORCID http://orcid.org/0000-0003-4790-6232
Aline FrossardCentre for Microbial Ecology and Genomics (CMEG), Department of Genetics, University of Pretoria, Pretoria, South Africa.
Olivier ZablockiCentre for Microbial Ecology and Genomics (CMEG), Department of Microbiology, University of Pretoria, Pretoria, South Africa.
Evelien M AdriaenssensCentre for Microbial Ecology and Genomics (CMEG), Department of Genetics, University of Pretoria, Pretoria, South Africa.
Riegardt M JohnsonCentre for Microbial Ecology and Genomics (CMEG), Department of Genetics, University of Pretoria, Pretoria, South Africa.
Mary SeelyGobabeb Research and Training Centre, Walvis Bay, Namibia.
Don A CowanCentre for Microbial Ecology and Genomics (CMEG), Department of Genetics, University of Pretoria, Pretoria, South Africa. don.cowan@up.ac.za.

Funding

National Research Foundation of South Africa N00113-95565
6 · The paper itself

Abstract

The hyperarid Namib desert is a coastal desert in southwestern Africa and one of the oldest and driest deserts on the planet. It is characterized by a west/east increasing precipitation gradient and by regular coastal fog events (extending up to 75 km inland) that can also provide soil moisture. In this study, we evaluated the role of this natural aridity and xeric gradient on edaphic microbial community structure and function in the Namib desert. A total of 80 individual soil samples were collected at 10-km intervals along a 190-km transect from the fog-dominated western coastal region to the eastern desert boundary. Seventeen physicochemical parameters were measured for each soil sample. Soil parameters reflected the three a priori defined climatic/xeric zones along the transect ("fog," "low rain," and "high rain"). Microbial community structures were characterized by terminal restriction fragment length polymorphism fingerprinting and shotgun metaviromics, and their functional capacities were determined by extracellular enzyme activity assays. Both microbial community structures and activities differed significantly between the three xeric zones. The deep sequencing of surface soil metavirome libraries also showed shifts in viral composition along the xeric transect. While bacterial community assembly was influenced by soil chemistry and stochasticity along the transect, variations in community "function" were apparently tuned by xeric stress.

Indexed as

MicrobiotaSoil MicrobiologyBacteriaBiodiversityDesert ClimateNamibiaPhylogenyPolymorphism, Restriction Fragment LengthSoilSoilAridity gradientDrylandEdaphic desert microbial communitiesExtracellular enzyme activitiesXeric stress

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.