Evidence map›Paper›PMID 28646875›Full record

ArticleBMC genomics2017

Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction.

Hideaki Hiraki, Hiroshi Kagoshima, Christopher Kraus, Philipp H Schiffer, Yumiko Ueta, Michael Kroiher, Einhard Schierenberg, Yuji Kohara

Abstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Parthenogenesis in dipterans: a genetic perspective.Proceedings. Biological sciences · 2023
    Review
  10. Nematode chromosomes.Genetics · 2022
    Review
  11. Article
  12. Review
  13. Genomic Features of Parthenogenetic Animals.The Journal of heredity · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Comparative genomics of 10 newEvolution letters · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hideaki HirakiGenome Biology Laboratory, National Institute of Genetics, Mishima, Japan.
Hiroshi KagoshimaGenome Biology Laboratory, National Institute of Genetics, Mishima, Japan.
Christopher KrausZoologisches Institut, Universität zu Köln, Cologne, NRW, Germany.
Philipp H SchifferZoologisches Institut, Universität zu Köln, Cologne, NRW, Germany.
Yumiko UetaGenome Biology Laboratory, National Institute of Genetics, Mishima, Japan.
Michael KroiherZoologisches Institut, Universität zu Köln, Cologne, NRW, Germany.
Einhard SchierenbergZoologisches Institut, Universität zu Köln, Cologne, NRW, Germany.
Yuji KoharaGenome Biology Laboratory, National Institute of Genetics, Mishima, Japan. ykohara@nig.ac.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSexual reproduction involving the fusion of egg and sperm is prevailing among eukaryotes. In contrast, the nematode Diploscapter coronatus, a close relative of the model Caenorhabditis elegans, reproduces parthenogenetically. Neither males nor sperm have been observed and some steps of meiosis are apparently skipped in this species. To uncover the genomic changes associated with the evolution of parthenogenesis in this nematode, we carried out a genome analysis.

resultsWe obtained a 170 Mbp draft genome in only 511 scaffolds with a N

conclusionsOur high-quality draft genome of D. coronatus reveals the peculiarities of the genome of parthenogenesis and provides some clues to the genetic basis for parthenogenetic reproduction. This draft genome should be the basis to elucidate fundamental questions related to parthenogenesis such as its origin and mechanisms through comparative analyses with other nematodes. Furthermore, being the closest outgroup to the genus Caenorhabditis, the draft genome will help to disclose many idiosyncrasies of the model C. elegans and its congeners in future studies.

Indexed as

GenomicsAllelesAnimalsGene Expression ProfilingMeiosisMolecular Sequence AnnotationNematodaParthenogenesisAllelic expressionCohesinGenome assemblyMeiosisNematodeParthenogenesis

Identifiers

PMID28646875
PMCPMC5483258

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.