Evidence map›Paper›PMID 28646326›Full record

ArticleJournal of molecular evolution2017

Transposable Elements Mediate Adaptive Debilitation of Flagella in Experimental Escherichia coli Populations.

Gordon R Plague, Krystal S Boodram, Kevin M Dougherty, Sandar Bregg, Daniel P Gilbert, Hira Bakshi, Daniel Costa

Abstract read
In one paragraph

Article in Journal of molecular evolution, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.4field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. BlihIA-A Novel Type I Restriction-Modification System fromInternational journal of molecular sciences · 2025
    Article
  5. Experimental evolution ofMicrobiology spectrum · 2025
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Gordon R PlagueDepartment of Biology, State University of New York at Potsdam, Potsdam, NY, 13676, USA. plaguegr@potsdam.edu.
Krystal S BoodramSimon Gratz High School, Philadelphia, PA, USA.
Kevin M DoughertyKellogg Biological Station, Michigan State University, Hickory Corners, MI, USA.
Sandar BreggDepartment of Biology, State University of New York at Potsdam, Potsdam, NY, 13676, USA.
Daniel P GilbertDepartment of Biology, State University of New York at Potsdam, Potsdam, NY, 13676, USA.
Hira BakshiDepartment of Biology, State University of New York at Potsdam, Potsdam, NY, 13676, USA.
Daniel CostaDepartment of Biology, State University of New York at Potsdam, Potsdam, NY, 13676, USA.
State University of New York at Potsdam · USDuke Medical Center · USGratz College · USMichigan State University · US

Funding

Experimental evolution of insertion sequence expansion in intracellular bacteriaR15GM081862 · NIGMS · STATE UNIVERSITY OF NEW YORK AT POTSDAM · PI PLAGUE, GORDON R. · 2008 to 2009
$362k
NIGMS NIH HHS R15 GM081862
6 · The paper itself

Abstract

Although insertion sequence (IS) elements are generally considered genomic parasites, they can mediate adaptive genetic changes in bacterial genomes. We discovered that among 12 laboratory-evolved Escherichia coli populations, three had experienced at least six different IS1-mediated deletions of flagellar genes. These deletions all involved the master flagellar regulator flhDC, and as such completely incapacitate motility. Two lines of evidence strongly suggest that these deletions were adaptive in our evolution experiment: (1) parallel evolution in three independent populations is highly unlikely just by chance, and (2) one of these deletion mutations swept to fixation within ~1000 generations, which is over two million times faster than expected if this deletion was instead selectively neutral and thus evolving by genetic drift. Because flagella are energetically expensive to synthesize and operate, we suspect that debilitating their construction conferred a fitness advantage in our well-stirred evolution experiment. These findings underscore the important role that IS elements can play in mediating adaptive loss-of-function mutations in bacteria.

Indexed as

Biological EvolutionDirected Molecular EvolutionDNA Transposable ElementsEscherichia coliEvolution, MolecularFlagellaGenes, BacterialGenetic DriftGenome, BacterialGenomicsMutationDNA Transposable ElementsAdaptive evolutionExperimental evolutionInsertion sequence elementLoss-of-function mutationNatural selectionParallel evolution

Identifiers

PMID28646326
PMCPMC6002858
OpenAlexW2688079433

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.