Evidence map›Paper›PMID 28646159›Full record

ArticleScientific reports2017

YvcK, a protein required for cell wall integrity and optimal carbon source utilization, binds uridine diphosphate-sugars.

Elodie Foulquier, Anne Galinier

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 24 citations in OpenAlex.

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  12. Microorganisms · 2021
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  13. The Natural AntimicrobialFoods (Basel, Switzerland) · 2021
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  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Elodie FoulquierLaboratoire de Chimie Bactérienne, CNRS - Aix Marseille Univ, IMM, 31 Chemin Joseph Aiguier, 13402, Marseille, Cedex 20, France.
Anne GalinierLaboratoire de Chimie Bactérienne, CNRS - Aix Marseille Univ, IMM, 31 Chemin Joseph Aiguier, 13402, Marseille, Cedex 20, France. galinier@imm.cnrs.fr.ORCID 0000-0001-5988-016X
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Bacillus subtilis, Listeria monocytogenes and in two Mycobacteria, it was previously shown that yvcK is a gene required for normal cell shape, for optimal carbon source utilization and for virulence of pathogenic bacteria. Here we report that the B. subtilis protein YvcK binds to Uridine diphosphate-sugars like Uridine diphosphate-Glucose (UDP-Glc) and Uridine diphosphate-N-acetylglucosamine (UDP-GlcNAc) in vitro. Using the crystal structure of Bacillus halodurans YvcK, we identified residues involved in this interaction. We tested the effect of point mutations affecting the ability of YvcK to bind UDP-sugars on B. subtilis physiology and on cell size. Indeed, it was shown that UDP-Glc serves as a metabolic signal to regulate B. subtilis cell size. Interestingly, we observed that, whereas a yvcK deletion results in the formation of unusually large cells, inactivation of YvcK UDP-sugar binding site does not affect cell length. However, these point mutations result in an increased sensitivity to bacitracin, an antibiotic which targets peptidoglycan synthesis. We thus propose that UDP-GlcNAc, a precursor of peptidoglycan, could be a good physiological ligand candidate of YvcK.

Indexed as

Amino Acid SequenceBacitracinBacterial Physiological PhenomenaBacterial ProteinsBinding SitesCarbonCell WallGene DeletionGluconatesModels, MolecularMolecular ConformationPoint MutationProtein BindingUridine Diphosphate SugarsBacitracinBacterial ProteinsCarbonGluconatesgluconic acidUridine Diphosphate Sugars

Identifiers

PMID28646159
PMCPMC5482804
OpenAlexW2654770002

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.