Evidence map›Paper›PMID 28645369›Full record

ArticleMethods in enzymology2017

Sequencing DNA for the Oxidatively Modified Base 8-Oxo-7,8-Dihydroguanine.

Aaron M Fleming, Yun Ding, Cynthia J Burrows

Abstract read
In one paragraph

Article in Methods in enzymology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Quantification of 8-International journal of molecular sciences · 2022
    Article
  6. Review
  7. Detection of Genomic Uracil Patterns.International journal of molecular sciences · 2021
    Review
  8. Review
  9. Review
  10. Aptamers for DNA Damage and Repair.International journal of molecular sciences · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Aaron M FlemingUniversity of Utah, Salt Lake City, UT, United States.
Yun DingUniversity of Utah, Salt Lake City, UT, United States.
Cynthia J BurrowsUniversity of Utah, Salt Lake City, UT, United States. Electronic address: burrows@chem.utah.edu.

Funding

UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Jared P Rutter · 1986 to 2026
$72.6M
Chemistry and Biology of Oxidized Purine Lesions in DNAR01CA090689 · NCI · UNIVERSITY OF UTAH · PI BURROWS, CYNTHIA J, DAVID, SHEILA SUE · 2002 to 2019
$5.5M
Nanopore Detection of DNA DamageR01GM093099 · NIGMS · UNIVERSITY OF UTAH · PI BURROWS, CYNTHIA J · 2011 to 2021
$3.0M
NCI NIH HHS P30 CA042014NCI NIH HHS R01 CA090689NIGMS NIH HHS R01 GM093099
6 · The paper itself

Abstract

The DNA base guanine (G) can be oxidatively modified to 8-oxo-7,8-dihydroguanine (OG). Extraction of genomic DNA followed by nuclease digestion and mass spectrometry analysis has found OG is present at background levels of ~1 out of 10

Indexed as

Base PairingElectrophoresis, Agar GelGuanineOxidation-ReductionPolymerase Chain ReactionSequence Analysis, DNA8-hydroxyguanineGuanineBase excision repairDNA sequencingFormamidopyrimidine DNA glycosylaseOxidative damage

Identifiers

PMID28645369
PMCPMC5623582

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.