ArticlePLoS genetics2017
Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria.
Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed, 75 citations in OpenAlex.
- Genome-wide association analysis and candidate gene identification for plant height in Shanxi local foxtail millet varieties.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Species-wide gene editing of a flowering regulator reveals hidden phenotypic variation.PLoS biology · 2025Article
- Dynamic QTL mapping reveals the genetic architecture of stem diameter across developmental stages in foxtail millet.Planta · 2025Article
- Longitudinal genome-wide association study reveals early QTL that predict biomass accumulation under cold stress in sorghum.Frontiers in plant science · 2024Article
- Mapping of dynamic quantitative trait loci for plant height in a RIL population of foxtail millet (Frontiers in plant science · 2024Article
- Temporal phenomic predictions from unoccupied aerial systems can outperform genomic predictions.G3 (Bethesda, Md.) · 2023Article
- Unoccupied aerial systems discovered overlooked loci capturing the variation of entire growing period in maize.The plant genome · 2021Article
- Correlation and co-localization of QTL for stomatal density, canopy temperature, and productivity with and without drought stress in Setaria.Journal of experimental botany · 2021Article
- QTL mapping for foxtail millet plant height in multi-environment using an ultra-high density bin map.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Complementary Phenotyping of Maize Root System Architecture by Root Pulling Force and X-Ray Imaging.Plant phenomics (Washington, D.C.) · 2021Article
- Increased Power and Accuracy of Causal Locus Identification in Time Series Genome-wide Association in Sorghum.Plant physiology · 2020Article
- QTG-Finder2: A Generalized Machine-Learning Algorithm for Prioritizing QTL Causal Genes in Plants.G3 (Bethesda, Md.) · 2020Article
- Unoccupied aerial system enabled functional modeling of maize height reveals dynamic expression of loci.Plant direct · 2020Article
- Functional QTL mapping and genomic prediction of canopy height in wheat measured using a robotic field phenotyping platform.Journal of experimental botany · 2020Article
- Smoothing and extraction of traits in the growth analysis of noninvasive phenotypic data.Plant methods · 2020Article
- Latent Space Phenotyping: Automatic Image-Based Phenotyping for Treatment Studies.Plant phenomics (Washington, D.C.) · 2020Article
- Dissecting new genetic components of salinity tolerance in two-row spring barley at the vegetative and reproductive stages.PloS one · 2020Article
- Integrating High-Throughput Phenotyping and Statistical Genomic Methods to Genetically Improve Longitudinal Traits in Crops.Frontiers in plant science · 2020Review
- High-throughput 3D modelling to dissect the genetic control of leaf elongation in barley (Hordeum vulgare).The Plant journal : for cell and molecular biology · 2019Article
- Genome-wide association of barley plant growth under drought stress using a nested association mapping population.BMC plant biology · 2019Article
Corrections and comments
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Authors and funding
12 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Vertical growth of plants is a dynamic process that is influenced by genetic and environmental factors and has a pronounced effect on overall plant architecture and biomass composition. We have performed six controlled growth trials of an interspecific Setaria italica x Setaria viridis recombinant inbred line population to assess how the genetic architecture of plant height is influenced by developmental queues, water availability and planting density. The non-destructive nature of plant height measurements has enabled us to monitor height throughout the plant life cycle in both field and controlled environments. We find that plant height is reduced under water limitation and high density planting and affected by growth environment (field vs. growth chamber). The results support a model where plant height is a heritable, polygenic trait and that the major genetic loci that influence plant height function independent of growth environment. The identity and contribution of loci that influence height changes dynamically throughout development and the reduction of growth observed in water limited environments is a consequence of delayed progression through the genetic program which establishes plant height in Setaria. In this population, alleles inherited from the weedy S. viridis parent act to increase plant height early, whereas a larger number of small effect alleles inherited from the domesticated S. italica parent collectively act to increase plant height later in development.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.