Evidence map›Paper›PMID 28643791›Full record

ArticleModern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc2017

EWSR1 fusion proteins mediate PAX7 expression in Ewing sarcoma.

Gregory W Charville, Wei-Lien Wang, Davis R Ingram, Angshumoy Roy, Dafydd Thomas, Rajiv M Patel, Jason L Hornick, Matt van de Rijn, Alexander J Lazar

Open access · bronzeAbstract readMulticenter Study
PubMed Publisher
In one paragraph

Article in Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 80 citations in OpenAlex.

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  8. The Recent Advances in Molecular Diagnosis of Soft Tissue Tumors.International journal of molecular sciences · 2023
    Review
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  13. Activity of pazopanib inOncoscience · 2023
    Article
  14. Article
  15. Does PAX7 and NKX2.2 immunoreactivity in Ewing sarcoma have prognostic significance?Virchows Archiv : an international journal of pathology · 2022
    Article
  16. Review
  17. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Gregory W CharvilleDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Wei-Lien WangDepartments of Pathology &Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Davis R IngramDepartments of Pathology &Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Angshumoy RoyDepartments of Pathology &Immunology and Pediatrics, Texas Children's Hospital, Baylor College of Medicine, Houston, TX, USA.
Dafydd ThomasDepartment of Pathology, University of Michigan School of Medicine, Ann Arbor, MI, USA.
Rajiv M PatelDepartment of Pathology, University of Michigan School of Medicine, Ann Arbor, MI, USA.
Jason L HornickDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, USA.
Matt van de RijnDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Alexander J LazarDepartments of Pathology &Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
The University of Texas MD Anderson Cancer Center · USStanford University · USUniversity of Michigan–Ann Arbor · USBrigham and Women's Hospital · USTexas Children's Hospital · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PAX7 is a paired-box transcription factor that is required for the developmental specification of adult skeletal muscle progenitors in mice. We previously demonstrated PAX7 expression as a marker of skeletal muscle differentiation in rhabdomyosarcoma. Here, using analyses of published whole-genome gene expression microarray data, we identify PAX7 as a gene with significantly increased expression in Ewing sarcoma in comparison to CIC-DUX4 round cell sarcoma. Analysis of PAX7 in a large cohort of 103 Ewing sarcoma cases by immunohistochemistry revealed expression in 99.0% of cases (102/103). PAX7 expression was noted in cases demonstrating three distinct Ewing sarcoma EWSR1 translocations involving FLI1, ERG, and NFATc2. No PAX7 expression was observed in any of 27 cases of CIC-DUX4 sarcoma by immunohistochemistry (0%; 0/27). Exploring the mechanism of PAX7 expression in Ewing sarcoma using curated RNA- and ChIP-sequencing data, we demonstrate that the EWSR1 fusion protein is required for PAX7 expression in Ewing sarcoma and identify a candidate EWSR1-FLI1-bound PAX7 enhancer that coincides with both a consensus GGAA repeat-containing binding site and a peak of regulatory H3K27 acetylation. Taken together, our findings provide mechanistic support for the utility of PAX7 immunohistochemistry in the diagnosis of Ewing sarcoma, while linking this sarcoma of uncertain histogenesis to a key transcriptional regulator of mammalian muscle progenitor cells.

Indexed as

AcetylationBiomarkers, TumorBone NeoplasmsCell Line, TumorChromatin Assembly and DisassemblyChromatin ImmunoprecipitationComputational BiologyEnhancer Elements, GeneticGene Expression Regulation, NeoplasticGene FusionHigh-Throughput Nucleotide SequencingHistonesHumansImmunohistochemistryOligonucleotide Array Sequence AnalysisOncogene Proteins, FusionBiomarkers, TumorCIC-DUX4 fusion protein, humanEWSR1-FLI1 fusion protein, humanEWSR1 protein, humanHistonesOncogene Proteins, FusionPAX7 protein, humanPAX7 Transcription FactorRNA-Binding Protein EWS

Identifiers

PMID28643791
OpenAlexW2671119825

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.