Evidence map›Paper›PMID 28643159›Full record

ArticleBehavior research methods2018

PyMICE: APython library for analysis of IntelliCage data.

Jakub M Dzik, Alicja Puścian, Zofia Mijakowska, Kasia Radwanska, Szymon Łęski

Abstract read
In one paragraph

Article in Behavior research methods, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. PSD-95 in CA1 Area Regulates Spatial Choice Depending on Age.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jakub M DzikDepartment of Neurophysiology Laboratory of Neuroinformatics, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Poland 3 Pasteur Str., Warsaw, 02-093, Poland.
Alicja PuścianDepartment of Neurophysiology Laboratory of Emotions Neurobiology, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Poland 3 Pasteur Str., Warsaw, 02-093, Poland.
Zofia MijakowskaDepartment of Molecular and Cellular Neurobiology Laboratory of Molecular Basis of Behavior, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Poland 3 Pasteur Str., Warsaw, 02-093, Poland.
Kasia RadwanskaDepartment of Molecular and Cellular Neurobiology Laboratory of Molecular Basis of Behavior, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Poland 3 Pasteur Str., Warsaw, 02-093, Poland.
Szymon ŁęskiDepartment of Neurophysiology Laboratory of Neuroinformatics, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Poland 3 Pasteur Str., Warsaw, 02-093, Poland. szleski@gmail.com.ORCID 0000-0003-1764-1907

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

IntelliCage is an automated system for recording the behavior of a group of mice housed together. It produces rich, detailed behavioral data calling for new methods and software for their analysis. Here we present PyMICE, a free and open-source library for analysis of IntelliCage data in the Python programming language. We describe the design and demonstrate the use of the library through a series of examples. PyMICE provides easy and intuitive access to IntelliCage data, and thus facilitates the possibility of using numerous other Python scientific libraries to form a complete data analysis workflow.

Indexed as

Behavior, AnimalLibraries, DigitalProgramming LanguagesSoftwareAnimalsBehavioral ResearchDatabases, FactualMiceAnalysisBehaviorIntelliCageLibraryMicePython

Identifiers

PMID28643159
PMCPMC5880855

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.