Evidence map›Paper›PMID 28642494›Full record

ArticleScientific reports2017

Proteome profiling reveals novel biomarkers to identify complicated parapneumonic effusions.

Kuo-An Wu, Chih-Ching Wu, Chi-De Chen, Chi-Ming Chu, Li-Jane Shih, Yu-Ching Liu, Chih-Liang Wang, Hsi-Hsien Lin, Chia-Yu Yang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Advances in laboratory medicine · 2023
    Article
  4. Evaluation of DiaSorin LiaisonAdvances in laboratory medicine · 2023
    Article
  5. Article
  6. Advances in pleural infection and malignancy.European respiratory review : an official journal of the European Respiratory Society · 2021
    Article
  7. Calprotectin in Lung Diseases.International journal of molecular sciences · 2021
    Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Kuo-An WuGraduate Institute of Clinical Medical Sciences, College of Medicine, Chang Gung University, Taoyuan, Taiwan.
Chih-Ching WuDepartment of Medical Biotechnology and Laboratory Science, College of Medicine, Chang Gung University, Taoyuan, Taiwan.
Chi-De ChenMolecular Medicine Research Center, Chang Gung University, Taoyuan, Taiwan.
Chi-Ming ChuDivision of Biomedical Statistics and Informatics, School of Public Health, National Defense Medical Center, Taipei, Taiwan.
Li-Jane ShihDepartment of Medical Laboratory, Taoyuan Armed Forces General Hospital, Taoyuan, Taiwan.
Yu-Ching LiuDepartment of Medical Biotechnology and Laboratory Science, College of Medicine, Chang Gung University, Taoyuan, Taiwan.
Chih-Liang WangDivision of Pulmonary Oncology and Interventional Bronchoscopy, Department of Thoracic Medicine, Chang Gung Memorial Hospital, Taoyuan, Taiwan.
Hsi-Hsien LinDepartment of Microbiology and Immunology, College of Medicine, Chang Gung University, Taoyuan, Taiwan. hhlin@mail.cgu.edu.tw.
Chia-Yu YangMolecular Medicine Research Center, Chang Gung University, Taoyuan, Taiwan. chiayu660122@gmail.com.
Chang Gung University · TWChang Gung Memorial Hospital · TWNational Defense Medical Center · TWTaoyuan Armed Forces General Hospital · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Patients with pneumonia and parapneumonic effusion (PPE) have elevated mortality and a poor prognosis. The aim of this study was to discover novel biomarkers to help distinguish between uncomplicated PPE (UPPE) and complicated PPE (CPPE). Using an iTRAQ-based quantitative proteomics, we identified 766 proteins in pleural effusions from PPE patients. In total, 45 of these proteins were quantified as upregulated proteins in CPPE. Four novel upregulated candidates (BPI, NGAL, AZU1, and calprotectin) were selected and further verified using enzyme-linked immunosorbent assays (ELISAs) on 220 patients with pleural effusions due to different causes. The pleural fluid levels of BPI, NGAL, AZU1, and calprotectin were significantly elevated in patients with CPPE. Among these four biomarkers, BPI had the best diagnostic value for CPPE, with an AUC value of 0.966, a sensitivity of 97%, and a specificity of 91.4%. A logistic regression analysis demonstrated a strong association between BPI levels > 10 ng/ml and CPPE (odds ratio = 341.3). Furthermore, the combination of pleural fluid BPI levels with LDH levels improved the sensitivity and specificity to 100% and 91.4%, respectively. Thus, our findings provided a comprehensive effusion proteome data set for PPE biomarker discovery and revealed novel biomarkers for the diagnosis of CPPE.

Indexed as

BiomarkersProteomeProteomicsAgedComputational BiologyFemaleHumansMaleMiddle AgedPleural EffusionPneumoniaReproducibility of ResultsSensitivity and SpecificitySpectrometry, Mass, Electrospray IonizationBiomarkersProteome

Identifiers

PMID28642494
PMCPMC5481374
OpenAlexW2625947337

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.