Evidence map›Paper›PMID 28641882›Full record

ArticleJournal of plant physiology2017

Ferredoxin-dependent bilin reductases in eukaryotic algae: Ubiquity and diversity.

Nathan C Rockwell, J Clark Lagarias

Abstract read
In one paragraph

Article in Journal of plant physiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Elucidating the origins of phycocyanobilin biosynthesis and phycobiliproteins.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Bilin-dependent regulation of chlorophyll biosynthesis by GUN4.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Nathan C RockwellDepartment of Molecular and Cellular Biology, University of California, Davis, CA 95616, United States.
J Clark LagariasDepartment of Molecular and Cellular Biology, University of California, Davis, CA 95616, United States. Electronic address: jclagarias@ucdavis.edu.
University of California, Davis · US

Funding

MOLECULAR MECHANISMS OF PHYTOCHROME SIGNALINGR01GM068552 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI LAGARIAS, JOHN CLARK · 2003 to 2020
$5.3M
NIGMS NIH HHS R01 GM068552
6 · The paper itself

Abstract

Linear tetrapyrroles (bilins) are produced from heme by heme oxygenase, usually forming biliverdin IXα (BV). Fungi and bacteria use BV as chromophore for phytochrome photoreceptors. Oxygenic photosynthetic organisms use BV as a substrate for ferredoxin-dependent bilin reductases (FDBRs), enzymes that produce diverse reduced bilins used as light-harvesting pigments in phycobiliproteins and as photoactive photoreceptor chromophores. Bilin biosynthesis is essential for phototrophic growth in Chlamydomonas reinhardtii despite the absence of phytochromes or phycobiliproteins in this organism, raising the possibility that bilins are more generally required for phototrophic growth by algae. We here leverage the recent expansion in available algal transcriptomes, cyanobacterial genomes, and environmental metagenomes to analyze the distribution and diversification of FDBRs. With the possible exception of euglenids, FDBRs are present in all photosynthetic eukaryotic lineages. Phylogenetic analysis demonstrates that algal FDBRs belong to the three previously recognized FDBR lineages. Our studies provide new insights into FDBR evolution and diversification.

Indexed as

BacteriaBacteriophagesBile PigmentsBiological EvolutionChlamydomonas reinhardtiiCyanobacteriaFerredoxinsOxidoreductasesPhotosynthesisPhylogenySequence AlignmentBile PigmentsFerredoxinsOxidoreductasesAlgal evolutionBiliverdinBioinformaticsCyanobacteriochromesOxygenic photosynthesisPhycocyanobilinPhycoerythrobilinPhylogeneticsPhytochromobilinSecondary endosymbiosisTetrapyrrole metabolism

Identifiers

PMID28641882
PMCPMC5603387
OpenAlexW2619171522

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.