Evidence map›Paper›PMID 28640909›Full record

ArticlePloS one2017

HIV-Tat regulates macrophage gene expression in the context of neuroAIDS.

Loreto Carvallo, Lillie Lopez, Jorge E Fajardo, Matias Jaureguiberry-Bravo, Andras Fiser, Joan W Berman

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 37 citations in OpenAlex.

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  15. Functional impact of HIV-1 Tat on cells of the CNS and its role in HAND.Cellular and molecular life sciences : CMLS · 2020
    Review
  16. Review
  17. Article
  18. Genetic variation and function of the HIV-1 Tat protein.Medical microbiology and immunology · 2019
    Review
  19. Sirtuin 1-Chromatin-Binding Dynamics Points to a Common Mechanism Regulating Inflammatory Targets in SIV Infection and in the Aging Brain.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2018
    Article
  20. The role of human dopamine transporter in NeuroAIDS.Pharmacology & therapeutics · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Loreto CarvalloDepartment of Pathology, Albert Einstein College of Medicine, Bronx, New York, United States of America.
Lillie LopezDepartment of Pathology, Albert Einstein College of Medicine, Bronx, New York, United States of America.
Jorge E FajardoDepartment of Systems and Computational Biology, Albert Einstein College of Medicine, Bronx, New York, United States of America.ORCID http://orcid.org/0000-0001-9701-8546
Matias Jaureguiberry-BravoDepartment of Pathology, Albert Einstein College of Medicine, Bronx, New York, United States of America.
Andras FiserDepartment of Systems and Computational Biology, Albert Einstein College of Medicine, Bronx, New York, United States of America.
Joan W BermanDepartment of Pathology, Albert Einstein College of Medicine, Bronx, New York, United States of America.
Albert Einstein College of Medicine · US

Funding

Training in HIV/AIDS Pathogenesis; Basic and Translational ResearchT32AI007501 · NIAID · YESHIVA UNIVERSITY · PI PRASAD, VINAYAKA R. · 1995 to 2024
$6.6M
Mechanisms of HAD:Role of CCL2 BBB & HIV InfectionR01MH075679 · NIMH · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI BERMAN, JOAN WEINBERGER · 2006 to 2016
$4.0M
Molecular basis of receptor-ligand recognition in the Immunological SynapseR01GM118709 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI FISER, ANDRAS · 2016 to 2019
$2.3M
NIAID NIH HHS T32 AI007501NIGMS NIH HHS R01 GM118709NIMH NIH HHS R01 MH075679
6 · The paper itself

Abstract

Despite the success of cART, greater than 50% of HIV infected people develop cognitive and motor deficits termed HIV-associated neurocognitive disorders (HAND). Macrophages are the major cell type infected in the CNS. Unlike for T cells, the virus does not kill macrophages and these long-lived cells may become HIV reservoirs in the brain. They produce cytokines/chemokines and viral proteins that promote inflammation and neuronal damage, playing a key role in HIV neuropathogenesis. HIV Tat is the transactivator of transcription that is essential for replication and transcriptional regulation of the virus and is the first protein to be produced after HIV infection. Even with successful cART, Tat is produced by infected cells. In this study we examined the role of the HIV Tat protein in the regulation of gene expression in human macrophages. Using THP-1 cells, a human monocyte/macrophage cell line, and their infection with lentivirus, we generated stable cell lines that express Tat-Flag. We performed ChIP-seq analysis of these cells and found 66 association sites of Tat in promoter or coding regions. Among these are C5, CRLF2/TSLPR, BDNF, and APBA1/Mint1, genes associated with inflammation/damage. We confirmed the association of Tat with these sequences by ChIP assay and expression of these genes in our THP-1 cell lines by qRT-PCR. We found that HIV Tat increased expression of C5, APBA1, and BDNF, and decreased CRLF2. The K50A Tat-mutation dysregulated expression of these genes without affecting the binding of the Tat complex to their gene sequences. Our data suggest that HIV Tat, produced by macrophage HIV reservoirs in the brain despite successful cART, contributes to neuropathogenesis in HIV-infected people.

Indexed as

Gene Expression RegulationAdaptor Proteins, Signal TransducingAIDS Dementia ComplexAmino Acid SubstitutionBrain-Derived Neurotrophic FactorCell DifferentiationCell LineComplement C5HumansMacrophagesNerve Tissue ProteinsReceptors, Cytokinetat Gene Products, Human Immunodeficiency VirusAdaptor Proteins, Signal TransducingAPBA1 protein, humanBrain-Derived Neurotrophic FactorComplement C5CRLF2 protein, humanNerve Tissue ProteinsReceptors, Cytokinetat Gene Products, Human Immunodeficiency Virus

Identifiers

PMID28640909
PMCPMC5481010
OpenAlexW2715755399

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.