Evidence map›Paper›PMID 28639374›Full record

ArticleJournal of medical primatology2018

SNP-based genetic characterization of the Tulane National Primate Research Center's conventional and specific pathogen-free rhesus macaque (Macaca mulatta) populations.

Sree Kanthaswamy, Jillian Ng, Robert F Oldt, Kathrine Phillippi-Falkenstein, H Michael Kubisch

Abstract read
In one paragraph

Article in Journal of medical primatology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 92% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Sree KanthaswamySchool of Mathematics and Natural Sciences, Arizona State University (ASU) at the West Campus, Glendale, AZ, USA.
Jillian NgCalifornia National Primate Research Center, University of California, Davis, CA, USA.
Robert F OldtSchool of Mathematics and Natural Sciences, Arizona State University (ASU) at the West Campus, Glendale, AZ, USA.
Kathrine Phillippi-FalkensteinDivision of Veterinary Medicine, Tulane National Primate Research Center, Covington, LA, USA.
H Michael KubischDivision of Veterinary Medicine, Tulane National Primate Research Center, Covington, LA, USA.ORCID 0000-0001-6281-8420
Maricopa Community Colleges - Glendale Community College · USTulane University · USUniversity of California, Davis · US

Funding

National Institute on Aging (NIA) ColonyP51OD011107 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Simon J. Atkinson · 2012 to 2026
$191.5M
Tulane NPRC SPF Sheltered Outdoor Enclosure ExpansionP51OD011104 · OD · TULANE UNIVERSITY OF LOUISIANA · PI L Lee HAMM · 2012 to 2026
$142.4M
Viral Testing Core - Maintenance of an SPF Macaque Breeding Colony for AIDS ResearchU42OD010568 · OD · TULANE UNIVERSITY OF LOUISIANA · PI Eric J. Vallender · 2013 to 2026
$21.7M
Tulane National Primate Research Center U24 AIDS SPF Breeding Colony MaintenanceU24OD011109 · OD · TULANE UNIVERSITY OF LOUISIANA · PI BOHM, RUDOLF PAUL · 2012 to 2016
$10.4M
NIH HHS P51 OD011104NIH HHS P51 OD011107NIH HHS U24 OD011109NIH HHS U42 OD010568
6 · The paper itself

Abstract

backgroundThe rhesus macaque is an important biomedical model organism, and the Tulane National Primate Research Center (TNPRC) has one of the largest rhesus macaque breeding colonies in the United States.

methodsSNP profiles from 3266 rhesus macaques were used to examine the TNPRC colony genetic composition over time and across conventional or SPF animals of Chinese and Indian ancestry.

resultsChinese origin animals were the least genetically diverse and the most inbred; however, since their derivation from their conventional forebearers, neither the Chinese nor the Indian SPF animals exhibit any significant loss of genetic diversity or differentiation.

conclusionsThe TNPRC colony managers have successfully minimized loss in genetic variation across generations. Although founder effects and bottlenecks among the Indian animals have been successfully curtailed, the Chinese subpopulation still show some influences from these events.

Indexed as

GenotypePolymorphism, Single NucleotideAnimalsFemaleLouisianaMacaca mulattaMaleSpecific Pathogen-Free Organismsgenetic compositiongenetic managementgenetic structurepopulation geneticssingle nucleotide polymorphisms

Identifiers

PMID28639374
PMCPMC5740026
OpenAlexW2653510657

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.