Evidence map›Paper›PMID 28639341›Full record

ArticleProtein science : a publication of the Protein Society2017

Rigidity of the extracellular part of HER2: Evidence from engineering subdomain interfaces and shared-helix DARPin-DARPin fusions.

Christian Jost, Jakob C Stüber, Annemarie Honegger, Yufan Wu, Alexander Batyuk, Andreas Plückthun

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Christian JostDepartment of Biochemistry, University of Zurich, 8057, Zurich, Switzerland.
Jakob C StüberDepartment of Biochemistry, University of Zurich, 8057, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-3406-0664
Annemarie HoneggerDepartment of Biochemistry, University of Zurich, 8057, Zurich, Switzerland.
Yufan WuDepartment of Biochemistry, University of Zurich, 8057, Zurich, Switzerland.
Alexander BatyukDepartment of Biochemistry, University of Zurich, 8057, Zurich, Switzerland.
Andreas PlückthunDepartment of Biochemistry, University of Zurich, 8057, Zurich, Switzerland.ORCID http://orcid.org/0000-0003-4191-5306
University of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The second member of the human ErbB family of receptor tyrosine kinases, HER2/hErbB2, is regarded as an exceptional case: The four extracellular subdomains could so far only be found in one fixed overall conformation, designated "open" and resembling the ligand-bound form of the other ErbB receptors. It thus appears to be different from the extracellular domains of the other family members that show inter-subdomain flexibility and exist in a "tethered" form in the absence of ligand. For HER2, there was so far no direct evidence for such a tethered conformation on the cell surface. Nonetheless, alternative conformations of HER2 in vivo could so far not be excluded. We now demonstrate the rigidity of HER2 on the surface of tumor cells by employing two orthogonal approaches of protein engineering: To directly test the potential of the extracellular domain of HER2 to adopt a pseudo-tethered conformation on the cell surface, we first designed HER2 variants with a destabilized interface between extracellular subdomains I and III that would favor deviation from the "open" conformation. Secondly, we used differently shaped versions of a Designed Ankyrin Repeat Protein (DARPin) fusion, recognizing subdomain I of HER2, devised to work as probes for a putative pseudo-tethered extracellular domain of HER2. Combining our approaches, we exclude, on live cells and in vitro, that significant proportions of HER2 deviate from the "open" conformation.

Indexed as

Ankyrin RepeatCell LineErb-b2 Receptor Tyrosine KinasesExtracellular SpaceHumansModels, MolecularMutationProtein BindingProtein DomainsProtein EngineeringRecombinant Fusion ProteinsERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesRecombinant Fusion Proteinsconformational probeDARPinsErbB receptorsHER2protein engineering

Identifiers

PMID28639341
PMCPMC5563139
OpenAlexW2680681823

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.