Evidence map›Paper›PMID 28639220›Full record

ArticleVirus genes2017

Emergence of rabbit haemorrhagic disease virus 2 in the archipelago of Madeira, Portugal (2016-2017).

Carina Luísa Carvalho, Sara Silva, Paz Gouveia, Margarida Costa, Elsa Leclerc Duarte, Ana Margarida Henriques, Sílvia Santos Barros, Tiago Luís, Fernanda Ramos, Teresa Fagulha and 2 more

Abstract read
PubMed Publisher
In one paragraph

Article in Virus genes, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Rabbit hemorrhagic disease virus 2, 2010-2023: a review of global detections and affected species.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2024
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Molecular methods in detection and epidemiologic studies of rabbit and hare viruses: a review.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2019
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Carina Luísa CarvalhoInstituto de Ciências Agrárias e Ambientais Mediterrânicas (ICAAM), Universidade de Évora, Núcleo da Mitra, 7000, Évora, Portugal.ORCID http://orcid.org/0000-0002-6648-9254
Sara SilvaDireção Regional para a Administração Pública do Porto Santo (DRAPS), Avenida Vieira de Castro, nº1, 9400-179, Porto Santo, Portugal.ORCID http://orcid.org/0000-0001-7198-9096
Paz GouveiaLaboratório Regional de Veterinária e Segurança Alimentar, Direção Regional de Agricultura (DRA) da Região Autónoma da Madeira, Caminho das Quebradas de Baixo, nº 79, S. Martinho, 9000-233, Funchal, Madeira, Portugal.ORCID http://orcid.org/0000-0002-5386-6604
Margarida CostaLaboratório Regional de Veterinária e Segurança Alimentar, Direção Regional de Agricultura (DRA) da Região Autónoma da Madeira, Caminho das Quebradas de Baixo, nº 79, S. Martinho, 9000-233, Funchal, Madeira, Portugal.ORCID http://orcid.org/0000-0002-1362-3480
Elsa Leclerc DuarteInstituto de Ciências Agrárias e Ambientais Mediterrânicas (ICAAM), Universidade de Évora, Núcleo da Mitra, 7000, Évora, Portugal.ORCID http://orcid.org/0000-0003-0589-3533
Ana Margarida HenriquesLaboratório de Virologia, Instituto Nacional de Investigação Agrária e Veterinária (INIAV), Av. da República, Quinta do Marquês, 2780-157, Oeiras, Portugal.ORCID http://orcid.org/0000-0003-1835-3077
Sílvia Santos BarrosLaboratório de Virologia, Instituto Nacional de Investigação Agrária e Veterinária (INIAV), Av. da República, Quinta do Marquês, 2780-157, Oeiras, Portugal.ORCID http://orcid.org/0000-0002-6246-1983
Tiago LuísLaboratório de Virologia, Instituto Nacional de Investigação Agrária e Veterinária (INIAV), Av. da República, Quinta do Marquês, 2780-157, Oeiras, Portugal.ORCID http://orcid.org/0000-0002-8527-3731
Fernanda RamosLaboratório de Virologia, Instituto Nacional de Investigação Agrária e Veterinária (INIAV), Av. da República, Quinta do Marquês, 2780-157, Oeiras, Portugal.ORCID http://orcid.org/0000-0001-8561-9846
Teresa FagulhaLaboratório de Virologia, Instituto Nacional de Investigação Agrária e Veterinária (INIAV), Av. da República, Quinta do Marquês, 2780-157, Oeiras, Portugal.ORCID http://orcid.org/0000-0002-6509-6651
Miguel FevereiroLaboratório de Virologia, Instituto Nacional de Investigação Agrária e Veterinária (INIAV), Av. da República, Quinta do Marquês, 2780-157, Oeiras, Portugal.ORCID http://orcid.org/0000-0003-1811-1414
Margarida Dias DuarteLaboratório de Virologia, Instituto Nacional de Investigação Agrária e Veterinária (INIAV), Av. da República, Quinta do Marquês, 2780-157, Oeiras, Portugal. margarida.duarte@iniav.pt.ORCID http://orcid.org/0000-0003-1488-9659

Funding

Fundação para a Ciência e a Tecnologia SFRH/79225/2011Fundação para a Ciência e a Tecnologia UID/AGR/00115/2013
6 · The paper itself

Abstract

We report the detection of rabbit haemorrhagic disease virus 2 (RHDV2) in the Madeira archipelago, Portugal. Viral circulation was confirmed by RT-qPCR and vp60 sequencing. Epidemiological data revealed the outbreak initiated in October 2016 in Porto Santo affecting wild and domestic rabbits. It was then detected three months later on the island of Madeira. Five haplotypes were identified and a genetic overall similarity of 99.54 to 99.89% was observed between the two viral populations. Unique single nucleotide polymorphisms were recognised in the Madeira archipelago strains, two of which resulting in amino acid substitutions at positions 480 and 570 in the VP60 protein. Phylogenetic investigation by Maximum Likelihood showed all the vp60 sequences from the Madeira archipelago group together with high bootstraps. The analysis also showed that the Madeira archipelago strains are closely related to the strains detected in the south of mainland Portugal in 2016, suggesting a possible introduction from the mainland. The epidemiological data and high genetic similarity indicate a common source for the Porto Santo and Madeira RHDV2 outbreaks. Human activity related to hunting was most probably at the origin of the Madeira outbreak.

Indexed as

Amino Acid SubstitutionAnimalsCaliciviridae InfectionsDisease OutbreaksHaplotypesHemorrhagic Disease Virus, RabbitPhylogenyPolymorphism, Single NucleotidePortugalRabbitsDomestic rabbitsMacaronesian regionMadeira archipelagoRabbit haemorrhagic disease (RHDV)Wild rabbits

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.