Evidence map›Paper›PMID 28639116›Full record

ArticlePlant molecular biology2017

Integration of transcriptomic and metabolic data reveals hub transcription factors involved in drought stress response in sunflower (Helianthus annuus L.).

Sebastián Moschen, Julio A Di Rienzo, Janet Higgins, Takayuki Tohge, Mutsumi Watanabe, Sergio González, Máximo Rivarola, Francisco García-García, Joaquin Dopazo, H Esteban Hopp and 5 more

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
10.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it, 76 citations in OpenAlex.

  1. Abiotic Stress in Crop Production.International journal of molecular sciences · 2023
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  18. Molecular Defensive Mechanism ofInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 4 countries.

Sebastián MoschenInstituto de Biotecnología, Centro de Investigaciones en Ciencias Agronómicas y Veterinarias, Instituto Nacional de Tecnología Agropecuaria, Hurlingham, Buenos Aires, Argentina.
Julio A Di RienzoFacultad de Ciencias Agropecuarias, Universidad Nacional de Córdoba, Córdoba, Argentina.
Janet HigginsEarlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.
Takayuki TohgeMax-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany.
Mutsumi WatanabeMax-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany.
Sergio GonzálezInstituto de Biotecnología, Centro de Investigaciones en Ciencias Agronómicas y Veterinarias, Instituto Nacional de Tecnología Agropecuaria, Hurlingham, Buenos Aires, Argentina.
Máximo RivarolaInstituto de Biotecnología, Centro de Investigaciones en Ciencias Agronómicas y Veterinarias, Instituto Nacional de Tecnología Agropecuaria, Hurlingham, Buenos Aires, Argentina.
Francisco García-GarcíaComputational Genomics Department, Centro de Investigación Príncipe Felipe. Functional Genomics Node (INB-ELIXIR-es). Bioinformatics in Rare Diseases (BiER), Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), Valencia, 46012, Spain.
Joaquin DopazoComputational Genomics Department, Centro de Investigación Príncipe Felipe. Functional Genomics Node (INB-ELIXIR-es). Bioinformatics in Rare Diseases (BiER), Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), Valencia, 46012, Spain.
H Esteban HoppInstituto de Biotecnología, Centro de Investigaciones en Ciencias Agronómicas y Veterinarias, Instituto Nacional de Tecnología Agropecuaria, Hurlingham, Buenos Aires, Argentina.
Rainer HoefgenMax-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany.
Alisdair R FernieMax-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany.
Norma PaniegoInstituto de Biotecnología, Centro de Investigaciones en Ciencias Agronómicas y Veterinarias, Instituto Nacional de Tecnología Agropecuaria, Hurlingham, Buenos Aires, Argentina.
Paula FernándezInstituto de Biotecnología, Centro de Investigaciones en Ciencias Agronómicas y Veterinarias, Instituto Nacional de Tecnología Agropecuaria, Hurlingham, Buenos Aires, Argentina.
Ruth A HeinzInstituto de Biotecnología, Centro de Investigaciones en Ciencias Agronómicas y Veterinarias, Instituto Nacional de Tecnología Agropecuaria, Hurlingham, Buenos Aires, Argentina. heinz.ruth@inta.gob.ar.
Max Planck Institute of Molecular Plant Physiology · DENational Agricultural Technology Institute · ARConsejo Nacional de Investigaciones Científicas y Técnicas · ARCentre for Biomedical Network Research on Rare Diseases · ESCentro de Investigacion Principe Felipe · ESEarlham Institute · GBUniversidad Nacional de Córdoba · AR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageBy integration of transcriptional and metabolic profiles we identified pathways and hubs transcription factors regulated during drought conditions in sunflower, useful for applications in molecular and/or biotechnological breeding. Drought is one of the most important environmental stresses that effects crop productivity in many agricultural regions. Sunflower is tolerant to drought conditions but the mechanisms involved in this tolerance remain unclear at the molecular level. The aim of this study was to characterize and integrate transcriptional and metabolic pathways related to drought stress in sunflower plants, by using a system biology approach. Our results showed a delay in plant senescence with an increase in the expression level of photosynthesis related genes as well as higher levels of sugars, osmoprotectant amino acids and ionic nutrients under drought conditions. In addition, we identified transcription factors that were upregulated during drought conditions and that may act as hubs in the transcriptional network. Many of these transcription factors belong to families implicated in the drought response in model species. The integration of transcriptomic and metabolomic data in this study, together with physiological measurements, has improved our understanding of the biological responses during droughts and contributes to elucidate the molecular mechanisms involved under this environmental condition. These findings will provide useful biotechnological tools to improve stress tolerance while maintaining crop yield under restricted water availability.

Indexed as

ChlorophyllGene Expression Regulation, PlantHelianthusPlant LeavesPlant ProteinsProtein Array AnalysisRNA, PlantStress, PhysiologicalTranscription FactorsWaterChlorophyllPlant ProteinsRNA, PlantTranscription FactorsWaterData integrationDroughtHelianthus annuus L.MetabolomicsSunflowerTranscriptomics

Identifiers

PMID28639116
OpenAlexW2647505661

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.