Evidence map›Paper›PMID 28638135›Full record

ArticleScientific reports2017

Temperature dependence of protein-water interactions in a gated yeast aquaporin.

Camilo Aponte-Santamaría, Gerhard Fischer, Petra Båth, Richard Neutze, Bert L de Groot

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 18 citations in OpenAlex.

  1. Dirhodium Tetraacetate Binding to Lysozyme at Body Temperature.International journal of molecular sciences · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 4 countries.

Camilo Aponte-SantamaríaMolecular Biomechanics Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany. ca.aponte@uniandes.edu.co.
Gerhard FischerDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0001-9861-1528
Petra BåthDepartment of Chemistry & Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Richard NeutzeDepartment of Chemistry & Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Bert L de GrootComputational Biomolecular Dynamics Group, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany. bgroot@gwdg.de.
University of Gothenburg · SEEuropean Molecular Biology Organization · DEMax Planck Institute for Biophysical Chemistry · DEUniversity of Cambridge · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Regulation of aquaporins is a key process of living organisms to counteract sudden osmotic changes. Aqy1, which is a water transporting aquaporin of the yeast Pichia pastoris, is suggested to be gated by chemo-mechanical stimuli as a protective regulatory-response against rapid freezing. Here, we tested the influence of temperature by determining the X-ray structure of Aqy1 at room temperature (RT) at 1.3 Å resolution, and by exploring the structural dynamics of Aqy1 during freezing through molecular dynamics simulations. At ambient temperature and in a lipid bilayer, Aqy1 adopts a closed conformation that is globally better described by the RT than by the low-temperature (LT) crystal structure. Locally, for the blocking-residue Tyr31 and the water molecules inside the pore, both LT and RT data sets are consistent with the positions observed in the simulations at room-temperature. Moreover, as the temperature was lowered, Tyr31 adopted a conformation that more effectively blocked the channel, and its motion was accompanied by a temperature-driven rearrangement of the water molecules inside the channel. We therefore speculate that temperature drives Aqy1 from a loosely- to a tightly-blocked state. This analysis provides high-resolution structural evidence of the influence of temperature on membrane-transport channels.

Indexed as

Protein ConformationAquaporin 1AquaporinsBiological TransportCrystallography, X-RayLipid BilayersMolecular Dynamics SimulationOsmosisPichiaSaccharomyces cerevisiae ProteinsWaterAquaporin 1AquaporinsAQY1 protein, S cerevisiaeLipid BilayersSaccharomyces cerevisiae ProteinsWater

Identifiers

PMID28638135
PMCPMC5479825
OpenAlexW2626410045

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.