ArticleJournal of integrative bioinformatics2017
Comparative miRomics of Salt-Tolerant and Salt-Sensitive Rice.
Article in Journal of integrative bioinformatics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed, 33 citations in OpenAlex.
- Article
- Whole-transcriptome profiling and identification of cold tolerance-related ceRNA networks inFrontiers in plant science · 2024Article
- MicroRNA2871b of Dongxiang Wild Rice (International journal of molecular sciences · 2023Article
- An miR156-regulated nucleobase-ascorbate transporter 2 confers cadmium tolerance via enhanced anti-oxidative capacity in barley.Journal of advanced research · 2023Article
- Article
- Integration of QTL Mapping and Whole Genome Sequencing Identifies Candidate Genes for Alkalinity Tolerance in Rice (International journal of molecular sciences · 2022Article
- Uncovering the Epigenetic Marks Involved in Mediating Salt Stress Tolerance in Plants.Frontiers in genetics · 2022Review
- Genome-Wide Association Mapping of Salinity Tolerance at the Seedling Stage in a Panel of Vietnamese Landraces Reveals New Valuable QTLs for Salinity Stress Tolerance Breeding in Rice.Plants (Basel, Switzerland) · 2021Article
- Integrated small RNA and Degradome sequencing provide insights into salt tolerance in sesame (Sesamum indicum L.).BMC genomics · 2020Article
- Mapping the Salt Stress-Induced Changes in the Root miRNome in Pokkali Rice.Biomolecules · 2020Article
- QTL mapping of yield component traits on bin map generated from resequencing a RIL population of foxtail millet (Setaria italica).BMC genomics · 2020Article
- Identification of microRNA-target modules from rice variety Pusa Basmati-1 under high temperature and salt stress.Functional & integrative genomics · 2019Article
- ARMOUR - A Rice miRNA: mRNA Interaction Resource.Frontiers in plant science · 2018Article
- Computational miRNomics - Integrative Approaches.Journal of integrative bioinformatics · 2017Article
Corrections and comments
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Increase in soil salt causes osmotic and ionic stress to plants, which inhibits their growth and productivity. Rice production is also hampered by salinity and the effect of salt is most severe at the seedling and reproductive stages. Salainity tolerance is a quantitative property controlled by multiple genes coding for signaling molecules, ion transporters, metabolic enzymes and transcription regulators. MicroRNAs are key modulators of gene-expression that act at the post-transcriptional level by translation repression or transcript cleavage. They also play an important role in regulating plant's response to salt-stress. In this work we adopted the approach of comparative and integrated data-mining to understand the miRNA-mediated regulation of salt-stress in rice. We profiled and compared the miRNA regulations using natural varieties and transgenic lines with contrasting behaviors in response to salt-stress. The information obtained from sRNAseq, RNAseq and degradome datasets was integrated to identify the salt-deregulated miRNAs, their targets and the associated metabolic pathways. The analysis revealed the modulation of many biological pathways, which are involved in salt-tolerance and play an important role in plant phenotype and physiology. The end modifications of the miRNAs were also studied in our analysis and isomiRs having a dynamic role in salt-tolerance mechanism were identified.
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