Evidence map›Paper›PMID 28637768›Full record

ArticleMolecular biology of the cell2017

VRK2A is an A-type lamin-dependent nuclear envelope kinase that phosphorylates BAF.

Birendra Kc, Danielle G May, Benjamin V Benson, Dae In Kim, Winnie G Shivega, Manaal H Ali, Randolph S Faustino, Alexandre R Campos, Kyle J Roux

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

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  17. Dephosphorylation in nuclear reassembly after mitosis.Frontiers in cell and developmental biology · 2022
    Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Birendra KcSanford Children's Health Research Center, Sanford Research, Sioux Falls, SD 57104.
Danielle G MaySanford Children's Health Research Center, Sanford Research, Sioux Falls, SD 57104.
Benjamin V BensonSanford Children's Health Research Center, Sanford Research, Sioux Falls, SD 57104.
Dae In KimSanford Children's Health Research Center, Sanford Research, Sioux Falls, SD 57104.
Winnie G ShivegaSanford Children's Health Research Center, Sanford Research, Sioux Falls, SD 57104.
Manaal H AliSanford Children's Health Research Center, Sanford Research, Sioux Falls, SD 57104.
Randolph S FaustinoSanford Children's Health Research Center, Sanford Research, Sioux Falls, SD 57104.
Alexandre R CamposProteomics Facility, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037.
Kyle J RouxSanford Children's Health Research Center, Sanford Research, Sioux Falls, SD 57104 kyle.roux@sanfordhealth.org.

Funding

Tumor Microenvironment and Cancer ImmunologyP30CA030199 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI Michael Jackson · 1985 to 2026
$107.2M
Yeast 2 HybridP20GM103620 · NIGMS · SANFORD RESEARCH/USD · PI ROUX, KYLE J · 2013 to 2023
$24.2M
The Impact of PD-1 Inhibition on Immune-Response to ChemoradiotherapyP20GM103548 · NIGMS · SANFORD RESEARCH/USD · PI MISKIMINS, W KEITH · 2012 to 2020
$20.8M
SUBSTRATE RIGIDITY AND GENE EXPRESSION: Role of Nuclear TensionR01EB014869 · NIBIB · UNIVERSITY OF FLORIDA · PI LELE, TANMAY P. · 2012 to 2019
$3.4M
Developing methods for proximity-dependent protein labelingR01GM102203 · NIGMS · SANFORD RESEARCH/USD · PI ROUX, KYLE J · 2013 to 2017
$1.5M
Cytoskeletal force generation on the nucleusR01GM102486 · NIGMS · UNIVERSITY OF FLORIDA · PI LELE, TANMAY P. · 2012 to 2015
$1.2M
NCI NIH HHS P30 CA030199NIBIB NIH HHS R01 EB014869NIGMS NIH HHS P20 GM103548NIGMS NIH HHS P20 GM103620NIGMS NIH HHS R01 GM102203NIGMS NIH HHS R01 GM102486
6 · The paper itself

Abstract

The nuclear envelope (NE) is critical for numerous fundamental cellular functions, and mutations in several NE constituents can lead to a heterogeneous spectrum of diseases. We used proximity biotinylation to uncover new constituents of the inner nuclear membrane (INM) by comparative BioID analysis of lamin A, Sun2 and a minimal INM-targeting motif. These studies identify vaccinia-related kinase-2 (VRK2) as a candidate constituent of the INM. The transmembrane VRK2A isoform is retained at the NE by association with A-type lamins. Furthermore, VRK2A physically interacts with A-type, but not B-type, lamins. Finally, we show that VRK2 phosphorylates barrier to autointegration factor (BAF), a small and highly dynamic chromatin-binding protein, which has roles including NE reassembly, cell cycle, and chromatin organization in cells, and subtly alters its nuclear mobility. Together these findings support the value of using BioID to identify unrecognized constituents of distinct subcellular compartments refractory to biochemical isolation and reveal VRK2A as a transmembrane kinase in the NE that regulates BAF.

Indexed as

BiotinylationDNA-Binding ProteinsHEK293 CellsHeLa CellsHumansIntracellular Signaling Peptides and ProteinsLamin Type ALamin Type BMembrane ProteinsNuclear EnvelopeNuclear ProteinsPhosphorylationProtein IsoformsProtein Serine-Threonine KinasesBANF1 protein, humanDNA-Binding ProteinsIntracellular Signaling Peptides and ProteinsLamin Type ALamin Type BMembrane ProteinsNuclear ProteinsProtein IsoformsProtein Serine-Threonine KinasesSUN2 protein, humanVRK2 protein, human

Identifiers

PMID28637768
PMCPMC5555652

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.