Evidence map›Paper›PMID 28637492›Full record

ArticleSkeletal muscle2017

Expression patterns of FSHD-causing DUX4 and myogenic transcription factors PAX3 and PAX7 are spatially distinct in differentiating human stem cell cultures.

Premi Haynes, Kelly Kernan, Suk-Lin Zhou, Daniel G Miller

Open access · goldAbstract read
In one paragraph

Article in Skeletal muscle, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 20 citations in OpenAlex.

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  6. Influence ofInternational journal of molecular sciences · 2023
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  15. DNA aptamers against the DUX4 protein reveal novel therapeutic implications for FSHD.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Premi HaynesDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Campus Box 358056, 850 Republican Street, Room N416, Seattle, WA, 98109, USA.
Kelly KernanDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Campus Box 358056, 850 Republican Street, Room N416, Seattle, WA, 98109, USA.
Suk-Lin ZhouDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Campus Box 358056, 850 Republican Street, Room N416, Seattle, WA, 98109, USA.
Daniel G MillerDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Campus Box 358056, 850 Republican Street, Room N416, Seattle, WA, 98109, USA. dgmiller@uw.edu.
University of Washington · US

Funding

Epigenetic Modifiers of D4Z4 in Facioscapulohumeral Muscular Dystrophy (FSHD)R01AR064197 · NIAMS · UNIVERSITY OF WASHINGTON · PI MILLER, DANIEL G · 2014 to 2018
$1.9M
Chromatin Modifications that modulate DUX4 expression in FSHDR56AR070778 · NIAMS · UNIVERSITY OF WASHINGTON · PI MILLER, DANIEL G · 2017 to 2017
$440k
NIAMS NIH HHS R01 AR064197NIAMS NIH HHS R56 AR070778
6 · The paper itself

Abstract

backgroundFacioscapulohumeral muscular dystrophy (FSHD) is most commonly inherited in an autosomal dominant pattern and caused by the abnormal expression of DUX4 in skeletal muscle. The DUX4 transcription factor has DNA binding domains similar to several paired class homeotic transcription factors, but only myogenic factors PAX3 and PAX7 rescue cell viability when co-expressed with DUX4 in mouse myoblasts. This observation suggests competition for DNA binding sites in satellite cells might limit muscle repair and may be one aspect of DUX4-associated myotoxicity. The competition hypothesis requires that DUX4 and PAX3/7 be expressed in the same cells at some point during development or in adult tissues. We modeled myogenesis using human isogenic iPS and ES cells and examined expression patterns of DUX4, PAX3, and PAX7 to determine if conditions that promote PAX3 and PAX7 expression in cell culture also promote DUX4 expression in the same cells.

methodsIsogenic iPSCs were generated from human fibroblasts of two FSHD-affected individuals with somatic mosaicism. Clones containing the shortened FSHD-causing D4Z4 array or the long non-pathogenic array were isolated from the same individuals. We also examined myogenesis in commercially available hES cell lines derived from FSHD-affected and non-affected embryos. DUX4, PAX3, and PAX7 messenger RNAs (mRNAs) were quantified during a 40-day differentiation protocol, and antibodies were used to identify cell types in different stages of differentiation to determine if DUX4 and PAX3 or PAX7 are present in the same cells.

resultsHuman iPS and ES cells differentiated into skeletal myocytes as evidenced by Titin positive multinucleated fibers appearing toward the end of a 40-day differentiation protocol. PAX3 and PAX7 were expressed at similar times during differentiation, and DUX4 positive nuclei were seen at terminal stages of differentiation in cells containing the short D4Z4 arrays. Nuclei that expressed both DUX4 and PAX3, or DUX4 and PAX7 were not observed after examining immunostained nuclei at five different time points during myogenic differentiation of pluripotent cells.

conclusionsWe conclude that DUX4, PAX3, and PAX7 have distinct expression patterns during myogenic differentiation of stem cells. Our findings are consistent with the hypothesis that muscle damage in FSHD is due to DUX4-mediated toxicity causing destruction of terminally differentiated myofibers. While these studies examine DUX4, PAX3, and PAX7 expression patterns during stem cell myogenesis, they should not be generalized to tissue repair in adult muscle tissue.

Indexed as

Cell DifferentiationAnimalsCells, CulturedEmbryonic Stem CellsFibroblastsGene Expression Regulation, DevelopmentalHomeodomain ProteinsHumansInduced Pluripotent Stem CellsMiceMuscular Dystrophy, FacioscapulohumeralMyoblastsPAX3 Transcription FactorPAX7 Transcription FactorDUX4L1 protein, humanHomeodomain ProteinsPAX3 protein, humanPAX3 Transcription FactorPAX7 protein, humanPAX7 Transcription FactorDUX4FacioscapulohumeralFSHDIsogenicMyogenesisPAX3PAX7Stem cells

Identifiers

PMID28637492
PMCPMC5480156
OpenAlexW2647078460

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.